Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03067 and BACOVA_03068 are separated by 18 nucleotides BACOVA_03068 and BACOVA_03069 are separated by 238 nucleotides BACOVA_03069 and BACOVA_03070 are separated by 103 nucleotides
BACOVA_03067: BACOVA_03067 - hypothetical protein, at 138,282 to 139,298
_03067
BACOVA_03068: BACOVA_03068 - hypothetical protein, at 139,317 to 139,934
_03068
BACOVA_03069: BACOVA_03069 - tRNA-Lys, at 140,173 to 140,245
_03069
BACOVA_03070: BACOVA_03070 - hypothetical protein, at 140,349 to 141,473
_03070
Position (kb)
140
141 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 139.211 kb on + strand at 139.226 kb on + strand at 139.238 kb on - strand at 139.269 kb on - strand at 139.301 kb on + strand at 139.302 kb on - strand at 139.304 kb on + strand at 139.305 kb on - strand at 139.361 kb on - strand at 139.364 kb on + strand at 139.364 kb on + strand at 139.376 kb on + strand at 139.404 kb on + strand, within BACOVA_03068 at 139.410 kb on + strand, within BACOVA_03068 at 139.411 kb on - strand, within BACOVA_03068 at 139.440 kb on + strand, within BACOVA_03068 at 139.440 kb on + strand, within BACOVA_03068 at 139.440 kb on + strand, within BACOVA_03068 at 139.441 kb on - strand, within BACOVA_03068 at 139.441 kb on - strand, within BACOVA_03068 at 139.444 kb on + strand, within BACOVA_03068 at 139.460 kb on + strand, within BACOVA_03068 at 139.469 kb on + strand, within BACOVA_03068 at 139.469 kb on + strand, within BACOVA_03068 at 139.495 kb on - strand, within BACOVA_03068 at 139.498 kb on - strand, within BACOVA_03068 at 139.509 kb on + strand, within BACOVA_03068 at 139.517 kb on + strand, within BACOVA_03068 at 139.523 kb on - strand, within BACOVA_03068 at 139.530 kb on + strand, within BACOVA_03068 at 139.596 kb on + strand, within BACOVA_03068 at 139.596 kb on + strand, within BACOVA_03068 at 139.598 kb on + strand, within BACOVA_03068 at 139.598 kb on + strand, within BACOVA_03068 at 139.600 kb on + strand, within BACOVA_03068 at 139.601 kb on - strand, within BACOVA_03068 at 139.611 kb on - strand, within BACOVA_03068 at 139.617 kb on + strand, within BACOVA_03068 at 139.618 kb on - strand, within BACOVA_03068 at 139.618 kb on - strand, within BACOVA_03068 at 139.651 kb on - strand, within BACOVA_03068 at 139.673 kb on + strand, within BACOVA_03068 at 139.674 kb on - strand, within BACOVA_03068 at 139.699 kb on - strand, within BACOVA_03068 at 139.707 kb on - strand, within BACOVA_03068 at 139.714 kb on - strand, within BACOVA_03068 at 139.714 kb on - strand, within BACOVA_03068 at 139.726 kb on - strand, within BACOVA_03068 at 139.740 kb on + strand, within BACOVA_03068 at 139.795 kb on - strand, within BACOVA_03068 at 139.813 kb on + strand, within BACOVA_03068 at 139.814 kb on - strand, within BACOVA_03068 at 139.814 kb on - strand, within BACOVA_03068 at 139.814 kb on - strand, within BACOVA_03068 at 139.858 kb on - strand, within BACOVA_03068 at 139.867 kb on + strand, within BACOVA_03068 at 139.867 kb on + strand, within BACOVA_03068 at 139.868 kb on - strand, within BACOVA_03068 at 139.868 kb on - strand, within BACOVA_03068 at 139.874 kb on + strand at 139.875 kb on - strand at 139.888 kb on - strand at 139.901 kb on + strand at 139.901 kb on + strand at 139.901 kb on + strand at 139.902 kb on - strand at 139.902 kb on - strand at 139.902 kb on - strand at 139.902 kb on - strand at 139.902 kb on - strand at 139.910 kb on + strand at 139.911 kb on - strand at 139.922 kb on + strand at 139.923 kb on - strand at 139.938 kb on + strand at 139.938 kb on + strand at 139.939 kb on - strand at 139.943 kb on + strand at 139.966 kb on + strand at 139.966 kb on + strand at 140.000 kb on + strand at 140.001 kb on - strand at 140.023 kb on + strand at 140.030 kb on + strand at 140.031 kb on - strand at 140.074 kb on - strand at 140.116 kb on + strand at 140.124 kb on + strand at 140.396 kb on - strand at 140.396 kb on - strand at 140.418 kb on - strand at 140.420 kb on + strand at 140.461 kb on - strand at 140.490 kb on + strand, within BACOVA_03070 at 140.491 kb on - strand, within BACOVA_03070 at 140.583 kb on + strand, within BACOVA_03070 at 140.707 kb on + strand, within BACOVA_03070 at 140.708 kb on - strand, within BACOVA_03070 at 140.708 kb on - strand, within BACOVA_03070 at 140.708 kb on - strand, within BACOVA_03070 at 140.708 kb on - strand, within BACOVA_03070 at 140.717 kb on + strand, within BACOVA_03070 at 140.718 kb on - strand, within BACOVA_03070 at 140.800 kb on - strand, within BACOVA_03070 at 140.800 kb on - strand, within BACOVA_03070 at 140.834 kb on - strand, within BACOVA_03070 at 140.853 kb on + strand, within BACOVA_03070 at 140.865 kb on + strand, within BACOVA_03070 at 140.883 kb on - strand, within BACOVA_03070 at 140.888 kb on - strand, within BACOVA_03070 at 140.892 kb on - strand, within BACOVA_03070 at 140.907 kb on + strand, within BACOVA_03070 at 140.908 kb on - strand, within BACOVA_03070 at 140.957 kb on - strand, within BACOVA_03070 at 140.957 kb on - strand, within BACOVA_03070 at 140.957 kb on - strand, within BACOVA_03070 at 140.959 kb on - strand, within BACOVA_03070 at 140.962 kb on - strand, within BACOVA_03070 at 140.964 kb on + strand, within BACOVA_03070 at 140.964 kb on + strand, within BACOVA_03070 at 140.965 kb on - strand, within BACOVA_03070 at 140.991 kb on + strand, within BACOVA_03070 at 140.992 kb on - strand, within BACOVA_03070 at 141.072 kb on + strand, within BACOVA_03070 at 141.072 kb on + strand, within BACOVA_03070 at 141.073 kb on - strand, within BACOVA_03070 at 141.131 kb on + strand, within BACOVA_03070 at 141.131 kb on + strand, within BACOVA_03070 at 141.132 kb on - strand, within BACOVA_03070 at 141.136 kb on - strand, within BACOVA_03070 at 141.163 kb on + strand, within BACOVA_03070 at 141.164 kb on - strand, within BACOVA_03070 at 141.216 kb on + strand, within BACOVA_03070 at 141.219 kb on + strand, within BACOVA_03070 at 141.219 kb on + strand, within BACOVA_03070 at 141.223 kb on + strand, within BACOVA_03070 at 141.229 kb on - strand, within BACOVA_03070
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 139,211 + -1.4 139,226 + +0.5 139,238 - +0.0 139,269 - +4.1 139,301 + -0.1 139,302 - -2.0 139,304 + -0.9 139,305 - -0.5 139,361 - -0.7 139,364 + -0.8 139,364 + +2.4 139,376 + -0.8 139,404 + BACOVA_03068 0.14 -1.5 139,410 + BACOVA_03068 0.15 +1.7 139,411 - BACOVA_03068 0.15 +1.3 139,440 + BACOVA_03068 0.20 +1.1 139,440 + BACOVA_03068 0.20 +0.7 139,440 + BACOVA_03068 0.20 -0.4 139,441 - BACOVA_03068 0.20 -0.8 139,441 - BACOVA_03068 0.20 -1.0 139,444 + BACOVA_03068 0.21 +2.7 139,460 + BACOVA_03068 0.23 +0.2 139,469 + BACOVA_03068 0.25 +1.1 139,469 + BACOVA_03068 0.25 +0.3 139,495 - BACOVA_03068 0.29 -2.0 139,498 - BACOVA_03068 0.29 +0.8 139,509 + BACOVA_03068 0.31 +1.5 139,517 + BACOVA_03068 0.32 -2.8 139,523 - BACOVA_03068 0.33 -0.5 139,530 + BACOVA_03068 0.34 -0.4 139,596 + BACOVA_03068 0.45 -0.0 139,596 + BACOVA_03068 0.45 -1.0 139,598 + BACOVA_03068 0.45 +0.6 139,598 + BACOVA_03068 0.45 -3.9 139,600 + BACOVA_03068 0.46 +0.9 139,601 - BACOVA_03068 0.46 -1.6 139,611 - BACOVA_03068 0.48 +0.2 139,617 + BACOVA_03068 0.49 -2.8 139,618 - BACOVA_03068 0.49 +0.0 139,618 - BACOVA_03068 0.49 -0.4 139,651 - BACOVA_03068 0.54 -1.2 139,673 + BACOVA_03068 0.58 +2.4 139,674 - BACOVA_03068 0.58 -0.1 139,699 - BACOVA_03068 0.62 +0.4 139,707 - BACOVA_03068 0.63 +0.0 139,714 - BACOVA_03068 0.64 -2.0 139,714 - BACOVA_03068 0.64 -0.9 139,726 - BACOVA_03068 0.66 +1.1 139,740 + BACOVA_03068 0.68 -2.6 139,795 - BACOVA_03068 0.77 +2.6 139,813 + BACOVA_03068 0.80 -1.4 139,814 - BACOVA_03068 0.80 +0.1 139,814 - BACOVA_03068 0.80 -0.9 139,814 - BACOVA_03068 0.80 +0.6 139,858 - BACOVA_03068 0.88 +1.5 139,867 + BACOVA_03068 0.89 -1.2 139,867 + BACOVA_03068 0.89 +4.3 139,868 - BACOVA_03068 0.89 +2.6 139,868 - BACOVA_03068 0.89 +1.5 139,874 + -0.3 139,875 - +1.4 139,888 - -0.3 139,901 + -0.9 139,901 + +1.5 139,901 + -0.5 139,902 - +1.2 139,902 - -1.4 139,902 - +0.1 139,902 - -1.0 139,902 - -1.8 139,910 + -0.7 139,911 - -3.0 139,922 + -3.7 139,923 - -2.6 139,938 + -1.0 139,938 + -3.1 139,939 - +0.1 139,943 + -2.7 139,966 + -1.2 139,966 + +2.4 140,000 + -2.7 140,001 - -2.0 140,023 + -1.1 140,030 + -1.3 140,031 - +1.1 140,074 - -1.6 140,116 + +2.4 140,124 + +1.5 140,396 - -2.4 140,396 - +1.5 140,418 - -1.7 140,420 + -2.3 140,461 - -3.6 140,490 + BACOVA_03070 0.13 -2.9 140,491 - BACOVA_03070 0.13 -0.3 140,583 + BACOVA_03070 0.21 +1.7 140,707 + BACOVA_03070 0.32 +1.5 140,708 - BACOVA_03070 0.32 +0.7 140,708 - BACOVA_03070 0.32 +1.2 140,708 - BACOVA_03070 0.32 +0.6 140,708 - BACOVA_03070 0.32 -0.6 140,717 + BACOVA_03070 0.33 -1.8 140,718 - BACOVA_03070 0.33 -2.4 140,800 - BACOVA_03070 0.40 +1.0 140,800 - BACOVA_03070 0.40 +1.1 140,834 - BACOVA_03070 0.43 +0.7 140,853 + BACOVA_03070 0.45 +1.0 140,865 + BACOVA_03070 0.46 -1.4 140,883 - BACOVA_03070 0.47 +1.1 140,888 - BACOVA_03070 0.48 +3.0 140,892 - BACOVA_03070 0.48 -0.5 140,907 + BACOVA_03070 0.50 +0.8 140,908 - BACOVA_03070 0.50 +0.1 140,957 - BACOVA_03070 0.54 +1.7 140,957 - BACOVA_03070 0.54 +0.4 140,957 - BACOVA_03070 0.54 +3.4 140,959 - BACOVA_03070 0.54 +0.5 140,962 - BACOVA_03070 0.54 +1.8 140,964 + BACOVA_03070 0.55 -0.7 140,964 + BACOVA_03070 0.55 +1.4 140,965 - BACOVA_03070 0.55 -2.2 140,991 + BACOVA_03070 0.57 +3.9 140,992 - BACOVA_03070 0.57 +2.4 141,072 + BACOVA_03070 0.64 -1.4 141,072 + BACOVA_03070 0.64 -0.7 141,073 - BACOVA_03070 0.64 +0.1 141,131 + BACOVA_03070 0.70 +1.1 141,131 + BACOVA_03070 0.70 -0.2 141,132 - BACOVA_03070 0.70 -1.4 141,136 - BACOVA_03070 0.70 +2.7 141,163 + BACOVA_03070 0.72 +0.6 141,164 - BACOVA_03070 0.72 +0.6 141,216 + BACOVA_03070 0.77 -0.6 141,219 + BACOVA_03070 0.77 -0.1 141,219 + BACOVA_03070 0.77 -0.8 141,223 + BACOVA_03070 0.78 -1.0 141,229 - BACOVA_03070 0.78 -0.9
Or see this region's nucleotide sequence