Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02975 and BACOVA_02976 are separated by 111 nucleotides BACOVA_02976 and BACOVA_02977 are separated by 115 nucleotides BACOVA_02977 and BACOVA_02978 are separated by 31 nucleotides BACOVA_02978 and BACOVA_02979 are separated by 18 nucleotides
BACOVA_02975: BACOVA_02975 - trehalose-phosphatase, at 52,791 to 55,064
_02975
BACOVA_02976: BACOVA_02976 - hypothetical protein, at 55,176 to 55,364
_02976
BACOVA_02977: BACOVA_02977 - putative K+-transporting ATPase, F subunit, at 55,480 to 55,593
_02977
BACOVA_02978: BACOVA_02978 - K+-transporting ATPase, A subunit, at 55,625 to 57,331
_02978
BACOVA_02979: BACOVA_02979 - K+-transporting ATPase, B subunit, at 57,350 to 59,383
_02979
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 54.634 kb on - strand, within BACOVA_02975 at 54.640 kb on - strand, within BACOVA_02975 at 54.725 kb on + strand, within BACOVA_02975 at 54.726 kb on - strand, within BACOVA_02975 at 54.728 kb on - strand, within BACOVA_02975 at 54.728 kb on - strand, within BACOVA_02975 at 54.730 kb on - strand, within BACOVA_02975 at 54.734 kb on + strand, within BACOVA_02975 at 54.734 kb on + strand, within BACOVA_02975 at 54.735 kb on - strand, within BACOVA_02975 at 54.735 kb on - strand, within BACOVA_02975 at 54.736 kb on + strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.737 kb on - strand, within BACOVA_02975 at 54.742 kb on + strand, within BACOVA_02975 at 54.749 kb on - strand, within BACOVA_02975 at 54.768 kb on - strand, within BACOVA_02975 at 54.768 kb on - strand, within BACOVA_02975 at 54.770 kb on + strand, within BACOVA_02975 at 54.770 kb on + strand, within BACOVA_02975 at 54.776 kb on + strand, within BACOVA_02975 at 54.776 kb on + strand, within BACOVA_02975 at 54.777 kb on - strand, within BACOVA_02975 at 54.892 kb on - strand at 54.906 kb on + strand at 54.907 kb on - strand at 55.015 kb on - strand at 55.028 kb on + strand at 55.029 kb on - strand at 55.032 kb on - strand at 55.032 kb on - strand at 55.044 kb on - strand at 55.064 kb on + strand at 55.065 kb on - strand at 55.065 kb on - strand at 55.122 kb on - strand at 55.182 kb on - strand at 55.212 kb on - strand, within BACOVA_02976 at 55.229 kb on - strand, within BACOVA_02976 at 55.256 kb on - strand, within BACOVA_02976 at 55.269 kb on - strand, within BACOVA_02976 at 55.269 kb on - strand, within BACOVA_02976 at 55.374 kb on - strand at 55.411 kb on + strand at 55.432 kb on + strand at 55.513 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.517 kb on - strand, within BACOVA_02977 at 55.533 kb on - strand, within BACOVA_02977 at 55.564 kb on + strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.565 kb on - strand, within BACOVA_02977 at 55.616 kb on - strand at 55.622 kb on + strand at 55.622 kb on + strand at 55.623 kb on - strand at 55.624 kb on + strand at 55.631 kb on - strand at 55.659 kb on + strand at 55.706 kb on - strand at 55.706 kb on - strand at 55.769 kb on - strand at 55.769 kb on - strand at 55.867 kb on - strand, within BACOVA_02978 at 55.940 kb on - strand, within BACOVA_02978 at 55.942 kb on + strand, within BACOVA_02978 at 55.951 kb on + strand, within BACOVA_02978 at 55.958 kb on - strand, within BACOVA_02978 at 55.982 kb on + strand, within BACOVA_02978 at 55.983 kb on - strand, within BACOVA_02978 at 55.984 kb on + strand, within BACOVA_02978 at 55.984 kb on + strand, within BACOVA_02978 at 56.006 kb on + strand, within BACOVA_02978 at 56.045 kb on - strand, within BACOVA_02978 at 56.063 kb on - strand, within BACOVA_02978 at 56.063 kb on - strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.080 kb on + strand, within BACOVA_02978 at 56.084 kb on - strand, within BACOVA_02978 at 56.092 kb on + strand, within BACOVA_02978 at 56.146 kb on - strand, within BACOVA_02978 at 56.146 kb on - strand, within BACOVA_02978 at 56.153 kb on - strand, within BACOVA_02978 at 56.159 kb on - strand, within BACOVA_02978 at 56.163 kb on + strand, within BACOVA_02978 at 56.231 kb on - strand, within BACOVA_02978 at 56.242 kb on - strand, within BACOVA_02978 at 56.245 kb on + strand, within BACOVA_02978 at 56.246 kb on - strand, within BACOVA_02978 at 56.285 kb on - strand, within BACOVA_02978 at 56.285 kb on - strand, within BACOVA_02978 at 56.333 kb on + strand, within BACOVA_02978 at 56.333 kb on + strand, within BACOVA_02978 at 56.334 kb on - strand, within BACOVA_02978 at 56.372 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.376 kb on - strand, within BACOVA_02978 at 56.430 kb on + strand, within BACOVA_02978 at 56.431 kb on - strand, within BACOVA_02978 at 56.448 kb on - strand, within BACOVA_02978 at 56.476 kb on + strand, within BACOVA_02978 at 56.488 kb on - strand, within BACOVA_02978 at 56.488 kb on - strand, within BACOVA_02978 at 56.518 kb on + strand, within BACOVA_02978 at 56.522 kb on - strand, within BACOVA_02978 at 56.522 kb on - strand, within BACOVA_02978 at 56.680 kb on + strand, within BACOVA_02978 at 56.693 kb on - strand, within BACOVA_02978 at 56.695 kb on + strand, within BACOVA_02978 at 56.729 kb on - strand, within BACOVA_02978 at 56.738 kb on - strand, within BACOVA_02978 at 56.738 kb on - strand, within BACOVA_02978 at 56.777 kb on + strand, within BACOVA_02978 at 56.777 kb on + strand, within BACOVA_02978 at 56.778 kb on - strand, within BACOVA_02978 at 56.778 kb on - strand, within BACOVA_02978 at 56.782 kb on + strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.783 kb on - strand, within BACOVA_02978 at 56.889 kb on + strand, within BACOVA_02978 at 56.910 kb on + strand, within BACOVA_02978 at 56.939 kb on + strand, within BACOVA_02978 at 56.946 kb on - strand, within BACOVA_02978 at 56.946 kb on - strand, within BACOVA_02978 at 56.993 kb on - strand, within BACOVA_02978 at 56.993 kb on - strand, within BACOVA_02978 at 57.027 kb on - strand, within BACOVA_02978 at 57.032 kb on + strand, within BACOVA_02978 at 57.033 kb on - strand, within BACOVA_02978 at 57.082 kb on + strand, within BACOVA_02978 at 57.083 kb on - strand, within BACOVA_02978 at 57.085 kb on + strand, within BACOVA_02978 at 57.171 kb on + strand at 57.172 kb on - strand at 57.191 kb on - strand at 57.304 kb on + strand at 57.349 kb on + strand at 57.359 kb on - strand at 57.362 kb on - strand at 57.394 kb on - strand at 57.464 kb on - strand at 57.487 kb on + strand at 57.506 kb on + strand at 57.506 kb on + strand at 57.506 kb on + strand at 57.507 kb on - strand at 57.511 kb on + strand at 57.517 kb on - strand at 57.517 kb on - strand at 57.547 kb on + strand at 57.548 kb on - strand at 57.548 kb on - strand at 57.549 kb on - strand at 57.559 kb on + strand, within BACOVA_02979 at 57.560 kb on - strand, within BACOVA_02979 at 57.571 kb on + strand, within BACOVA_02979 at 57.572 kb on - strand, within BACOVA_02979 at 57.573 kb on + strand, within BACOVA_02979 at 57.574 kb on - strand, within BACOVA_02979 at 57.604 kb on + strand, within BACOVA_02979 at 57.605 kb on - strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.642 kb on + strand, within BACOVA_02979 at 57.646 kb on + strand, within BACOVA_02979 at 57.647 kb on - strand, within BACOVA_02979 at 57.688 kb on + strand, within BACOVA_02979 at 57.700 kb on + strand, within BACOVA_02979 at 57.732 kb on + strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.733 kb on - strand, within BACOVA_02979 at 57.814 kb on + strand, within BACOVA_02979 at 57.899 kb on - strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.900 kb on + strand, within BACOVA_02979 at 57.901 kb on - strand, within BACOVA_02979 at 58.025 kb on - strand, within BACOVA_02979 at 58.075 kb on + strand, within BACOVA_02979 at 58.075 kb on + strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.076 kb on - strand, within BACOVA_02979 at 58.138 kb on + strand, within BACOVA_02979 at 58.138 kb on + strand, within BACOVA_02979 at 58.139 kb on - strand, within BACOVA_02979 at 58.165 kb on + strand, within BACOVA_02979 at 58.175 kb on - strand, within BACOVA_02979 at 58.196 kb on - strand, within BACOVA_02979 at 58.225 kb on - strand, within BACOVA_02979 at 58.247 kb on - strand, within BACOVA_02979 at 58.251 kb on + strand, within BACOVA_02979 at 58.273 kb on + strand, within BACOVA_02979 at 58.274 kb on - strand, within BACOVA_02979 at 58.274 kb on - strand, within BACOVA_02979 at 58.276 kb on + strand, within BACOVA_02979 at 58.329 kb on + strand, within BACOVA_02979
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 54,634 - BACOVA_02975 0.81 -1.9 54,640 - BACOVA_02975 0.81 -2.3 54,725 + BACOVA_02975 0.85 -1.7 54,726 - BACOVA_02975 0.85 +0.8 54,728 - BACOVA_02975 0.85 -2.5 54,728 - BACOVA_02975 0.85 +0.4 54,730 - BACOVA_02975 0.85 +0.5 54,734 + BACOVA_02975 0.85 +1.5 54,734 + BACOVA_02975 0.85 -0.4 54,735 - BACOVA_02975 0.85 -0.5 54,735 - BACOVA_02975 0.85 +1.2 54,736 + BACOVA_02975 0.86 +0.8 54,737 - BACOVA_02975 0.86 +0.0 54,737 - BACOVA_02975 0.86 -0.4 54,737 - BACOVA_02975 0.86 -3.1 54,742 + BACOVA_02975 0.86 -0.9 54,749 - BACOVA_02975 0.86 -0.6 54,768 - BACOVA_02975 0.87 -1.2 54,768 - BACOVA_02975 0.87 -2.3 54,770 + BACOVA_02975 0.87 -0.1 54,770 + BACOVA_02975 0.87 +0.5 54,776 + BACOVA_02975 0.87 +1.0 54,776 + BACOVA_02975 0.87 +1.6 54,777 - BACOVA_02975 0.87 +0.3 54,892 - -1.0 54,906 + +0.7 54,907 - +1.2 55,015 - -1.6 55,028 + -1.3 55,029 - +0.0 55,032 - +1.2 55,032 - -0.1 55,044 - +0.0 55,064 + -0.6 55,065 - -1.1 55,065 - -0.1 55,122 - -1.4 55,182 - +2.8 55,212 - BACOVA_02976 0.19 +1.7 55,229 - BACOVA_02976 0.28 -0.8 55,256 - BACOVA_02976 0.42 +1.4 55,269 - BACOVA_02976 0.49 +3.9 55,269 - BACOVA_02976 0.49 +0.1 55,374 - +1.3 55,411 + -0.1 55,432 + -1.2 55,513 - BACOVA_02977 0.29 -0.5 55,517 - BACOVA_02977 0.32 -1.0 55,517 - BACOVA_02977 0.32 +0.3 55,517 - BACOVA_02977 0.32 +2.7 55,533 - BACOVA_02977 0.46 -0.9 55,564 + BACOVA_02977 0.74 -1.2 55,565 - BACOVA_02977 0.75 -1.2 55,565 - BACOVA_02977 0.75 -0.6 55,565 - BACOVA_02977 0.75 -0.2 55,616 - +2.7 55,622 + -3.3 55,622 + +1.9 55,623 - -2.2 55,624 + +1.6 55,631 - +1.3 55,659 + +5.0 55,706 - -0.8 55,706 - -0.9 55,769 - -0.1 55,769 - +0.4 55,867 - BACOVA_02978 0.14 -1.1 55,940 - BACOVA_02978 0.18 -1.3 55,942 + BACOVA_02978 0.19 -0.6 55,951 + BACOVA_02978 0.19 -0.3 55,958 - BACOVA_02978 0.20 -1.7 55,982 + BACOVA_02978 0.21 +1.5 55,983 - BACOVA_02978 0.21 +1.2 55,984 + BACOVA_02978 0.21 -1.1 55,984 + BACOVA_02978 0.21 +3.3 56,006 + BACOVA_02978 0.22 +2.2 56,045 - BACOVA_02978 0.25 +3.5 56,063 - BACOVA_02978 0.26 -2.0 56,063 - BACOVA_02978 0.26 -0.7 56,080 + BACOVA_02978 0.27 +0.4 56,080 + BACOVA_02978 0.27 -1.5 56,080 + BACOVA_02978 0.27 +1.3 56,084 - BACOVA_02978 0.27 -3.5 56,092 + BACOVA_02978 0.27 -1.1 56,146 - BACOVA_02978 0.31 -2.0 56,146 - BACOVA_02978 0.31 -0.8 56,153 - BACOVA_02978 0.31 -1.0 56,159 - BACOVA_02978 0.31 -1.7 56,163 + BACOVA_02978 0.32 +0.3 56,231 - BACOVA_02978 0.36 -0.3 56,242 - BACOVA_02978 0.36 -0.4 56,245 + BACOVA_02978 0.36 +1.7 56,246 - BACOVA_02978 0.36 +0.9 56,285 - BACOVA_02978 0.39 +2.8 56,285 - BACOVA_02978 0.39 -0.8 56,333 + BACOVA_02978 0.41 -1.0 56,333 + BACOVA_02978 0.41 +0.1 56,334 - BACOVA_02978 0.42 -1.4 56,372 - BACOVA_02978 0.44 +1.2 56,376 - BACOVA_02978 0.44 -2.1 56,376 - BACOVA_02978 0.44 -1.3 56,376 - BACOVA_02978 0.44 -0.7 56,430 + BACOVA_02978 0.47 -1.1 56,431 - BACOVA_02978 0.47 -0.8 56,448 - BACOVA_02978 0.48 +0.1 56,476 + BACOVA_02978 0.50 +2.3 56,488 - BACOVA_02978 0.51 -0.4 56,488 - BACOVA_02978 0.51 -1.2 56,518 + BACOVA_02978 0.52 -1.3 56,522 - BACOVA_02978 0.53 +0.8 56,522 - BACOVA_02978 0.53 -0.9 56,680 + BACOVA_02978 0.62 +2.8 56,693 - BACOVA_02978 0.63 +0.5 56,695 + BACOVA_02978 0.63 +0.3 56,729 - BACOVA_02978 0.65 -2.2 56,738 - BACOVA_02978 0.65 -1.8 56,738 - BACOVA_02978 0.65 +0.5 56,777 + BACOVA_02978 0.67 -1.3 56,777 + BACOVA_02978 0.67 +0.2 56,778 - BACOVA_02978 0.68 +1.3 56,778 - BACOVA_02978 0.68 +0.3 56,782 + BACOVA_02978 0.68 -0.1 56,783 - BACOVA_02978 0.68 +0.1 56,783 - BACOVA_02978 0.68 +0.1 56,783 - BACOVA_02978 0.68 +0.3 56,783 - BACOVA_02978 0.68 +0.9 56,783 - BACOVA_02978 0.68 -2.0 56,889 + BACOVA_02978 0.74 -2.0 56,910 + BACOVA_02978 0.75 -0.8 56,939 + BACOVA_02978 0.77 +0.6 56,946 - BACOVA_02978 0.77 -1.6 56,946 - BACOVA_02978 0.77 +2.1 56,993 - BACOVA_02978 0.80 -1.3 56,993 - BACOVA_02978 0.80 +0.8 57,027 - BACOVA_02978 0.82 +1.7 57,032 + BACOVA_02978 0.82 +1.7 57,033 - BACOVA_02978 0.82 +1.3 57,082 + BACOVA_02978 0.85 -0.3 57,083 - BACOVA_02978 0.85 +0.0 57,085 + BACOVA_02978 0.86 +0.7 57,171 + +0.1 57,172 - -1.6 57,191 - +1.6 57,304 + +3.5 57,349 + +1.4 57,359 - +1.1 57,362 - +0.1 57,394 - +0.3 57,464 - +0.1 57,487 + -2.7 57,506 + -0.9 57,506 + -0.6 57,506 + -2.7 57,507 - +2.5 57,511 + +0.2 57,517 - +0.4 57,517 - -1.3 57,547 + -1.3 57,548 - +0.4 57,548 - +0.8 57,549 - -2.2 57,559 + BACOVA_02979 0.10 +0.8 57,560 - BACOVA_02979 0.10 -1.2 57,571 + BACOVA_02979 0.11 +0.2 57,572 - BACOVA_02979 0.11 -0.7 57,573 + BACOVA_02979 0.11 +0.6 57,574 - BACOVA_02979 0.11 -1.9 57,604 + BACOVA_02979 0.12 -2.8 57,605 - BACOVA_02979 0.13 -0.9 57,642 + BACOVA_02979 0.14 +1.3 57,642 + BACOVA_02979 0.14 +0.4 57,642 + BACOVA_02979 0.14 +2.2 57,642 + BACOVA_02979 0.14 -2.1 57,646 + BACOVA_02979 0.15 +1.0 57,647 - BACOVA_02979 0.15 -0.6 57,688 + BACOVA_02979 0.17 +0.0 57,700 + BACOVA_02979 0.17 -0.1 57,732 + BACOVA_02979 0.19 -1.2 57,733 - BACOVA_02979 0.19 +0.6 57,733 - BACOVA_02979 0.19 -0.9 57,733 - BACOVA_02979 0.19 -2.7 57,814 + BACOVA_02979 0.23 -3.3 57,899 - BACOVA_02979 0.27 +2.5 57,900 + BACOVA_02979 0.27 -0.9 57,900 + BACOVA_02979 0.27 +1.5 57,900 + BACOVA_02979 0.27 -1.3 57,900 + BACOVA_02979 0.27 -1.0 57,901 - BACOVA_02979 0.27 -3.0 58,025 - BACOVA_02979 0.33 +1.8 58,075 + BACOVA_02979 0.36 +4.6 58,075 + BACOVA_02979 0.36 +0.7 58,076 - BACOVA_02979 0.36 +1.9 58,076 - BACOVA_02979 0.36 +1.9 58,076 - BACOVA_02979 0.36 -2.0 58,138 + BACOVA_02979 0.39 +0.1 58,138 + BACOVA_02979 0.39 -1.5 58,139 - BACOVA_02979 0.39 +0.4 58,165 + BACOVA_02979 0.40 +1.1 58,175 - BACOVA_02979 0.41 -0.2 58,196 - BACOVA_02979 0.42 +1.4 58,225 - BACOVA_02979 0.43 -0.1 58,247 - BACOVA_02979 0.44 -1.0 58,251 + BACOVA_02979 0.44 -0.7 58,273 + BACOVA_02979 0.45 -1.5 58,274 - BACOVA_02979 0.45 +0.3 58,274 - BACOVA_02979 0.45 +1.0 58,276 + BACOVA_02979 0.46 +0.8 58,329 + BACOVA_02979 0.48 -1.0
Or see this region's nucleotide sequence