Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02453 and BACOVA_02454 are separated by 228 nucleotides BACOVA_02454 and BACOVA_02455 are separated by 131 nucleotides BACOVA_02455 and BACOVA_02456 are separated by 162 nucleotides BACOVA_02456 and BACOVA_02457 are separated by 51 nucleotides
BACOVA_02453: BACOVA_02453 - hypothetical protein, at 216,750 to 217,094
_02453
BACOVA_02454: BACOVA_02454 - hypothetical protein, at 217,323 to 217,733
_02454
BACOVA_02455: BACOVA_02455 - site-specific recombinase, phage integrase family, at 217,865 to 218,818
_02455
BACOVA_02456: BACOVA_02456 - hypothetical protein, at 218,981 to 219,121
_02456
BACOVA_02457: BACOVA_02457 - transcription termination/antitermination factor NusG, at 219,173 to 219,748
_02457
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 216.943 kb on - strand, within BACOVA_02453 at 217.034 kb on + strand, within BACOVA_02453 at 217.051 kb on - strand, within BACOVA_02453 at 217.051 kb on - strand, within BACOVA_02453 at 217.166 kb on + strand at 217.167 kb on - strand at 217.199 kb on + strand at 217.218 kb on + strand at 217.288 kb on + strand at 217.324 kb on + strand at 217.324 kb on + strand at 217.425 kb on + strand, within BACOVA_02454 at 217.425 kb on + strand, within BACOVA_02454 at 217.425 kb on + strand, within BACOVA_02454 at 217.426 kb on - strand, within BACOVA_02454 at 217.426 kb on - strand, within BACOVA_02454 at 217.427 kb on + strand, within BACOVA_02454 at 217.472 kb on - strand, within BACOVA_02454 at 217.489 kb on + strand, within BACOVA_02454 at 217.493 kb on + strand, within BACOVA_02454 at 217.493 kb on + strand, within BACOVA_02454 at 217.494 kb on - strand, within BACOVA_02454 at 217.526 kb on + strand, within BACOVA_02454 at 217.527 kb on - strand, within BACOVA_02454 at 217.560 kb on + strand, within BACOVA_02454 at 217.560 kb on + strand, within BACOVA_02454 at 217.564 kb on + strand, within BACOVA_02454 at 217.565 kb on - strand, within BACOVA_02454 at 217.565 kb on - strand, within BACOVA_02454 at 217.577 kb on - strand, within BACOVA_02454 at 217.602 kb on + strand, within BACOVA_02454 at 217.703 kb on + strand at 217.768 kb on + strand at 217.780 kb on + strand at 217.780 kb on + strand at 219.597 kb on + strand, within BACOVA_02457 at 219.630 kb on + strand, within BACOVA_02457 at 219.644 kb on - strand, within BACOVA_02457 at 219.644 kb on - strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.648 kb on + strand, within BACOVA_02457 at 219.655 kb on + strand, within BACOVA_02457 at 219.662 kb on - strand, within BACOVA_02457 at 219.683 kb on - strand, within BACOVA_02457 at 219.719 kb on + strand at 219.768 kb on + strand at 219.768 kb on + strand at 219.769 kb on - strand at 219.776 kb on - strand at 219.776 kb on - strand at 219.776 kb on - strand at 219.803 kb on - strand at 219.807 kb on + strand at 219.807 kb on + strand at 219.808 kb on - strand at 219.808 kb on - strand at 219.814 kb on - strand at 219.814 kb on - strand at 219.815 kb on + strand at 219.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 216,943 - BACOVA_02453 0.56 -0.2 217,034 + BACOVA_02453 0.82 +1.1 217,051 - BACOVA_02453 0.87 +0.1 217,051 - BACOVA_02453 0.87 +0.9 217,166 + -2.9 217,167 - -0.1 217,199 + -0.4 217,218 + -1.6 217,288 + -0.9 217,324 + -0.4 217,324 + -1.2 217,425 + BACOVA_02454 0.25 -1.1 217,425 + BACOVA_02454 0.25 +1.4 217,425 + BACOVA_02454 0.25 -2.4 217,426 - BACOVA_02454 0.25 -0.4 217,426 - BACOVA_02454 0.25 -2.5 217,427 + BACOVA_02454 0.25 -0.3 217,472 - BACOVA_02454 0.36 -0.7 217,489 + BACOVA_02454 0.40 -1.9 217,493 + BACOVA_02454 0.41 -1.4 217,493 + BACOVA_02454 0.41 -0.4 217,494 - BACOVA_02454 0.42 +0.9 217,526 + BACOVA_02454 0.49 -0.3 217,527 - BACOVA_02454 0.50 +0.4 217,560 + BACOVA_02454 0.58 +0.8 217,560 + BACOVA_02454 0.58 -0.3 217,564 + BACOVA_02454 0.59 -0.6 217,565 - BACOVA_02454 0.59 +0.4 217,565 - BACOVA_02454 0.59 +0.4 217,577 - BACOVA_02454 0.62 -1.4 217,602 + BACOVA_02454 0.68 +0.6 217,703 + +0.6 217,768 + -1.2 217,780 + -1.9 217,780 + +0.1 219,597 + BACOVA_02457 0.74 -1.6 219,630 + BACOVA_02457 0.79 -0.6 219,644 - BACOVA_02457 0.82 -0.5 219,644 - BACOVA_02457 0.82 +0.0 219,648 + BACOVA_02457 0.82 -2.5 219,648 + BACOVA_02457 0.82 +1.5 219,648 + BACOVA_02457 0.82 +1.1 219,655 + BACOVA_02457 0.84 +2.1 219,662 - BACOVA_02457 0.85 +1.6 219,683 - BACOVA_02457 0.89 +4.5 219,719 + +0.1 219,768 + -0.6 219,768 + -0.9 219,769 - +4.1 219,776 - +4.3 219,776 - +0.7 219,776 - +4.1 219,803 - +1.1 219,807 + +0.1 219,807 + +0.6 219,808 - +3.5 219,808 - +2.0 219,814 - +4.5 219,814 - +0.3 219,815 + +1.1 219,816 - +3.6
Or see this region's nucleotide sequence