Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02409

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02407 and BACOVA_02408 are separated by 24 nucleotidesBACOVA_02408 and BACOVA_02409 are separated by 97 nucleotidesBACOVA_02409 and BACOVA_02410 are separated by 152 nucleotidesBACOVA_02410 and BACOVA_02411 are separated by 21 nucleotides BACOVA_02407: BACOVA_02407 - hypothetical protein, at 174,806 to 176,200 _02407 BACOVA_02408: BACOVA_02408 - cyclic nucleotide-binding domain protein, at 176,225 to 176,788 _02408 BACOVA_02409: BACOVA_02409 - acyltransferase, at 176,886 to 178,037 _02409 BACOVA_02410: BACOVA_02410 - acetyltransferase, GNAT family, at 178,190 to 178,660 _02410 BACOVA_02411: BACOVA_02411 - phosphoribosylglycinamide formyltransferase 2, at 178,682 to 179,851 _02411 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 175.889 kb on + strand, within BACOVA_02407at 176.055 kb on - strand, within BACOVA_02407at 176.112 kb on - strandat 176.141 kb on + strandat 176.173 kb on + strandat 176.176 kb on + strandat 176.177 kb on - strandat 176.180 kb on + strandat 176.186 kb on - strandat 176.190 kb on + strandat 176.209 kb on - strandat 176.242 kb on + strandat 176.243 kb on - strandat 176.258 kb on + strandat 176.307 kb on + strand, within BACOVA_02408at 176.308 kb on - strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.312 kb on + strand, within BACOVA_02408at 176.313 kb on - strand, within BACOVA_02408at 176.313 kb on - strand, within BACOVA_02408at 176.327 kb on - strand, within BACOVA_02408at 176.366 kb on + strand, within BACOVA_02408at 176.366 kb on + strand, within BACOVA_02408at 176.397 kb on + strand, within BACOVA_02408at 176.398 kb on - strand, within BACOVA_02408at 176.425 kb on + strand, within BACOVA_02408at 176.425 kb on + strand, within BACOVA_02408at 176.528 kb on + strand, within BACOVA_02408at 176.531 kb on + strand, within BACOVA_02408at 176.571 kb on - strand, within BACOVA_02408at 176.572 kb on + strand, within BACOVA_02408at 176.573 kb on - strand, within BACOVA_02408at 176.580 kb on + strand, within BACOVA_02408at 176.627 kb on - strand, within BACOVA_02408at 176.627 kb on - strand, within BACOVA_02408at 176.673 kb on - strand, within BACOVA_02408at 176.707 kb on - strand, within BACOVA_02408at 176.773 kb on - strandat 176.794 kb on - strandat 176.869 kb on + strandat 176.875 kb on + strandat 176.969 kb on + strandat 176.970 kb on - strandat 177.017 kb on + strand, within BACOVA_02409at 177.023 kb on + strand, within BACOVA_02409at 177.049 kb on + strand, within BACOVA_02409at 177.100 kb on - strand, within BACOVA_02409at 177.157 kb on + strand, within BACOVA_02409at 177.200 kb on + strand, within BACOVA_02409at 177.213 kb on - strand, within BACOVA_02409at 177.247 kb on + strand, within BACOVA_02409at 177.247 kb on + strand, within BACOVA_02409at 177.247 kb on + strand, within BACOVA_02409at 177.247 kb on + strand, within BACOVA_02409at 177.248 kb on - strand, within BACOVA_02409at 177.248 kb on - strand, within BACOVA_02409at 177.248 kb on - strand, within BACOVA_02409at 177.248 kb on - strand, within BACOVA_02409at 177.251 kb on + strand, within BACOVA_02409at 177.251 kb on + strand, within BACOVA_02409at 177.251 kb on + strand, within BACOVA_02409at 177.252 kb on - strand, within BACOVA_02409at 177.282 kb on - strand, within BACOVA_02409at 177.385 kb on - strand, within BACOVA_02409at 177.385 kb on - strand, within BACOVA_02409at 177.403 kb on - strand, within BACOVA_02409at 177.467 kb on - strand, within BACOVA_02409at 177.491 kb on + strand, within BACOVA_02409at 177.492 kb on - strand, within BACOVA_02409at 177.504 kb on + strand, within BACOVA_02409at 177.567 kb on - strand, within BACOVA_02409at 177.590 kb on + strand, within BACOVA_02409at 177.591 kb on - strand, within BACOVA_02409at 177.617 kb on + strand, within BACOVA_02409at 177.617 kb on + strand, within BACOVA_02409at 177.647 kb on + strand, within BACOVA_02409at 177.647 kb on + strand, within BACOVA_02409at 177.648 kb on - strand, within BACOVA_02409at 177.648 kb on - strand, within BACOVA_02409at 177.650 kb on + strand, within BACOVA_02409at 177.650 kb on + strand, within BACOVA_02409at 177.651 kb on - strand, within BACOVA_02409at 177.809 kb on - strand, within BACOVA_02409at 177.809 kb on - strand, within BACOVA_02409at 177.809 kb on - strand, within BACOVA_02409at 177.812 kb on + strand, within BACOVA_02409at 177.812 kb on + strand, within BACOVA_02409at 177.827 kb on + strand, within BACOVA_02409at 177.829 kb on + strand, within BACOVA_02409at 177.829 kb on + strand, within BACOVA_02409at 177.829 kb on + strand, within BACOVA_02409at 177.850 kb on + strand, within BACOVA_02409at 177.850 kb on + strand, within BACOVA_02409at 177.851 kb on - strand, within BACOVA_02409at 177.851 kb on - strand, within BACOVA_02409at 177.867 kb on + strand, within BACOVA_02409at 177.867 kb on + strand, within BACOVA_02409at 177.868 kb on - strand, within BACOVA_02409at 177.868 kb on - strand, within BACOVA_02409at 177.868 kb on - strand, within BACOVA_02409at 177.876 kb on + strand, within BACOVA_02409at 177.877 kb on - strand, within BACOVA_02409at 177.903 kb on + strand, within BACOVA_02409at 177.929 kb on - strandat 177.944 kb on + strandat 177.957 kb on - strandat 177.966 kb on + strandat 177.966 kb on + strandat 177.967 kb on - strandat 177.967 kb on - strandat 177.967 kb on - strandat 177.984 kb on + strandat 177.984 kb on + strandat 177.997 kb on + strandat 178.002 kb on - strandat 178.076 kb on + strandat 178.077 kb on - strandat 178.099 kb on + strandat 178.099 kb on + strandat 178.100 kb on - strandat 178.115 kb on + strandat 178.116 kb on - strandat 178.117 kb on + strandat 178.118 kb on - strandat 178.181 kb on + strandat 178.214 kb on - strandat 178.216 kb on - strandat 178.348 kb on - strand, within BACOVA_02410at 178.348 kb on - strand, within BACOVA_02410at 178.364 kb on - strand, within BACOVA_02410at 178.423 kb on + strand, within BACOVA_02410at 178.424 kb on - strand, within BACOVA_02410at 178.424 kb on - strand, within BACOVA_02410at 178.424 kb on - strand, within BACOVA_02410at 178.424 kb on - strand, within BACOVA_02410at 178.424 kb on - strand, within BACOVA_02410at 178.425 kb on + strand, within BACOVA_02410at 178.425 kb on + strand, within BACOVA_02410at 178.439 kb on + strand, within BACOVA_02410at 178.488 kb on + strand, within BACOVA_02410at 178.488 kb on + strand, within BACOVA_02410at 178.489 kb on - strand, within BACOVA_02410at 178.526 kb on - strand, within BACOVA_02410at 178.640 kb on + strandat 178.680 kb on + strandat 178.683 kb on + strandat 178.694 kb on + strandat 178.766 kb on + strandat 178.766 kb on + strandat 178.777 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.822 kb on - strand, within BACOVA_02411at 178.822 kb on - strand, within BACOVA_02411at 178.825 kb on + strand, within BACOVA_02411at 178.861 kb on - strand, within BACOVA_02411at 179.011 kb on + strand, within BACOVA_02411at 179.012 kb on - strand, within BACOVA_02411at 179.012 kb on - strand, within BACOVA_02411at 179.012 kb on - strand, within BACOVA_02411at 179.012 kb on - strand, within BACOVA_02411

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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175,889 + BACOVA_02407 0.78 -0.3
176,055 - BACOVA_02407 0.90 -1.7
176,112 - -2.0
176,141 + -0.4
176,173 + -0.3
176,176 + +1.6
176,177 - -1.8
176,180 + -0.3
176,186 - +0.2
176,190 + -0.3
176,209 - -0.1
176,242 + -3.4
176,243 - -0.4
176,258 + -0.8
176,307 + BACOVA_02408 0.15 -2.8
176,308 - BACOVA_02408 0.15 -0.4
176,312 + BACOVA_02408 0.15 -0.1
176,312 + BACOVA_02408 0.15 -2.2
176,312 + BACOVA_02408 0.15 -0.1
176,313 - BACOVA_02408 0.16 +1.3
176,313 - BACOVA_02408 0.16 -1.3
176,327 - BACOVA_02408 0.18 +1.7
176,366 + BACOVA_02408 0.25 +2.7
176,366 + BACOVA_02408 0.25 +1.7
176,397 + BACOVA_02408 0.30 +1.3
176,398 - BACOVA_02408 0.31 -0.8
176,425 + BACOVA_02408 0.35 -0.3
176,425 + BACOVA_02408 0.35 -0.1
176,528 + BACOVA_02408 0.54 +1.9
176,531 + BACOVA_02408 0.54 -1.7
176,571 - BACOVA_02408 0.61 +3.3
176,572 + BACOVA_02408 0.62 -1.3
176,573 - BACOVA_02408 0.62 +3.7
176,580 + BACOVA_02408 0.63 +2.8
176,627 - BACOVA_02408 0.71 +0.9
176,627 - BACOVA_02408 0.71 -2.2
176,673 - BACOVA_02408 0.79 +0.2
176,707 - BACOVA_02408 0.85 +1.5
176,773 - -0.8
176,794 - -1.2
176,869 + +0.2
176,875 + -0.1
176,969 + +0.2
176,970 - -0.6
177,017 + BACOVA_02409 0.11 -0.7
177,023 + BACOVA_02409 0.12 +0.4
177,049 + BACOVA_02409 0.14 -1.5
177,100 - BACOVA_02409 0.19 +0.0
177,157 + BACOVA_02409 0.24 -1.9
177,200 + BACOVA_02409 0.27 -1.6
177,213 - BACOVA_02409 0.28 +2.0
177,247 + BACOVA_02409 0.31 -1.0
177,247 + BACOVA_02409 0.31 +0.7
177,247 + BACOVA_02409 0.31 -0.2
177,247 + BACOVA_02409 0.31 +0.8
177,248 - BACOVA_02409 0.31 +0.6
177,248 - BACOVA_02409 0.31 -1.9
177,248 - BACOVA_02409 0.31 -1.6
177,248 - BACOVA_02409 0.31 +0.4
177,251 + BACOVA_02409 0.32 -0.1
177,251 + BACOVA_02409 0.32 +1.7
177,251 + BACOVA_02409 0.32 +3.0
177,252 - BACOVA_02409 0.32 -0.4
177,282 - BACOVA_02409 0.34 -0.1
177,385 - BACOVA_02409 0.43 -0.4
177,385 - BACOVA_02409 0.43 -1.0
177,403 - BACOVA_02409 0.45 +0.6
177,467 - BACOVA_02409 0.50 -0.3
177,491 + BACOVA_02409 0.53 +2.4
177,492 - BACOVA_02409 0.53 -0.7
177,504 + BACOVA_02409 0.54 +0.4
177,567 - BACOVA_02409 0.59 -0.5
177,590 + BACOVA_02409 0.61 +2.0
177,591 - BACOVA_02409 0.61 -0.7
177,617 + BACOVA_02409 0.63 +1.3
177,617 + BACOVA_02409 0.63 -0.1
177,647 + BACOVA_02409 0.66 +1.4
177,647 + BACOVA_02409 0.66 -0.0
177,648 - BACOVA_02409 0.66 -0.8
177,648 - BACOVA_02409 0.66 +1.1
177,650 + BACOVA_02409 0.66 +0.2
177,650 + BACOVA_02409 0.66 -0.1
177,651 - BACOVA_02409 0.66 -1.0
177,809 - BACOVA_02409 0.80 -1.7
177,809 - BACOVA_02409 0.80 +0.2
177,809 - BACOVA_02409 0.80 +0.7
177,812 + BACOVA_02409 0.80 -0.3
177,812 + BACOVA_02409 0.80 +1.7
177,827 + BACOVA_02409 0.82 -1.2
177,829 + BACOVA_02409 0.82 -1.2
177,829 + BACOVA_02409 0.82 -1.0
177,829 + BACOVA_02409 0.82 +0.2
177,850 + BACOVA_02409 0.84 +1.9
177,850 + BACOVA_02409 0.84 +1.1
177,851 - BACOVA_02409 0.84 -0.3
177,851 - BACOVA_02409 0.84 +0.6
177,867 + BACOVA_02409 0.85 -1.0
177,867 + BACOVA_02409 0.85 -0.4
177,868 - BACOVA_02409 0.85 +1.5
177,868 - BACOVA_02409 0.85 -0.3
177,868 - BACOVA_02409 0.85 -1.8
177,876 + BACOVA_02409 0.86 +1.8
177,877 - BACOVA_02409 0.86 -1.1
177,903 + BACOVA_02409 0.88 +1.6
177,929 - +0.2
177,944 + -1.4
177,957 - -1.0
177,966 + -1.7
177,966 + +0.6
177,967 - -1.3
177,967 - +1.4
177,967 - -0.3
177,984 + +0.2
177,984 + +0.4
177,997 + -3.8
178,002 - -0.5
178,076 + -0.7
178,077 - +2.0
178,099 + -2.4
178,099 + +0.0
178,100 - +1.3
178,115 + +0.9
178,116 - -0.3
178,117 + -0.1
178,118 - -1.3
178,181 + -0.0
178,214 - +0.6
178,216 - -0.7
178,348 - BACOVA_02410 0.34 -2.5
178,348 - BACOVA_02410 0.34 -0.3
178,364 - BACOVA_02410 0.37 +3.5
178,423 + BACOVA_02410 0.49 -0.3
178,424 - BACOVA_02410 0.50 +0.2
178,424 - BACOVA_02410 0.50 -0.8
178,424 - BACOVA_02410 0.50 -2.4
178,424 - BACOVA_02410 0.50 -0.1
178,424 - BACOVA_02410 0.50 +0.5
178,425 + BACOVA_02410 0.50 -0.3
178,425 + BACOVA_02410 0.50 -0.5
178,439 + BACOVA_02410 0.53 +0.4
178,488 + BACOVA_02410 0.63 +3.2
178,488 + BACOVA_02410 0.63 -1.8
178,489 - BACOVA_02410 0.63 +0.2
178,526 - BACOVA_02410 0.71 +0.9
178,640 + +0.7
178,680 + +0.2
178,683 + +0.6
178,694 + -0.8
178,766 + +1.6
178,766 + +1.0
178,777 + -2.7
178,796 - +0.3
178,796 - -1.7
178,822 - BACOVA_02411 0.12 -3.1
178,822 - BACOVA_02411 0.12 -0.8
178,825 + BACOVA_02411 0.12 -0.7
178,861 - BACOVA_02411 0.15 -2.1
179,011 + BACOVA_02411 0.28 +0.9
179,012 - BACOVA_02411 0.28 -0.3
179,012 - BACOVA_02411 0.28 -1.0
179,012 - BACOVA_02411 0.28 -2.2
179,012 - BACOVA_02411 0.28 -0.6

Or see this region's nucleotide sequence