Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01960

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01959 and BACOVA_01960 are separated by 180 nucleotidesBACOVA_01960 and BACOVA_01961 are separated by 53 nucleotides BACOVA_01959: BACOVA_01959 - GH3 auxin-responsive promoter, at 168,046 to 169,572 _01959 BACOVA_01960: BACOVA_01960 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 169,753 to 170,889 _01960 BACOVA_01961: BACOVA_01961 - SNF2 family N-terminal domain protein, at 170,943 to 173,783 _01961 Position (kb) 169 170 171Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 168.761 kb on + strand, within BACOVA_01959at 168.762 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.833 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.861 kb on - strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.926 kb on + strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.033 kb on + strand, within BACOVA_01959at 169.034 kb on - strand, within BACOVA_01959at 169.044 kb on + strand, within BACOVA_01959at 169.064 kb on + strand, within BACOVA_01959at 169.065 kb on - strand, within BACOVA_01959at 169.117 kb on - strand, within BACOVA_01959at 169.260 kb on + strand, within BACOVA_01959at 169.298 kb on + strand, within BACOVA_01959at 169.343 kb on + strand, within BACOVA_01959at 169.403 kb on + strand, within BACOVA_01959at 169.404 kb on - strand, within BACOVA_01959at 169.425 kb on - strandat 169.445 kb on + strandat 169.512 kb on + strandat 169.513 kb on - strandat 169.522 kb on + strandat 169.524 kb on + strandat 169.525 kb on - strandat 169.525 kb on - strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.527 kb on - strandat 169.588 kb on + strandat 169.598 kb on + strandat 169.612 kb on - strandat 169.620 kb on + strandat 169.621 kb on - strandat 169.626 kb on + strandat 169.685 kb on + strandat 169.685 kb on + strandat 169.700 kb on + strandat 169.726 kb on - strandat 169.726 kb on - strandat 169.741 kb on + strandat 169.742 kb on - strandat 169.750 kb on + strandat 169.769 kb on - strandat 169.790 kb on - strandat 169.803 kb on - strandat 169.803 kb on - strandat 169.864 kb on + strandat 169.885 kb on - strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.950 kb on + strand, within BACOVA_01960at 170.021 kb on - strand, within BACOVA_01960at 170.023 kb on + strand, within BACOVA_01960at 170.026 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.391 kb on + strand, within BACOVA_01960at 170.483 kb on + strand, within BACOVA_01960at 170.484 kb on - strand, within BACOVA_01960at 170.492 kb on + strand, within BACOVA_01960at 170.507 kb on - strand, within BACOVA_01960at 170.544 kb on - strand, within BACOVA_01960at 170.594 kb on + strand, within BACOVA_01960at 170.610 kb on + strand, within BACOVA_01960at 170.655 kb on - strand, within BACOVA_01960at 170.662 kb on - strand, within BACOVA_01960at 170.670 kb on + strand, within BACOVA_01960at 170.694 kb on - strand, within BACOVA_01960at 170.694 kb on - strand, within BACOVA_01960at 170.701 kb on - strand, within BACOVA_01960at 170.972 kb on + strandat 170.973 kb on - strandat 170.973 kb on - strandat 170.973 kb on - strandat 170.973 kb on - strandat 171.021 kb on + strandat 171.022 kb on - strandat 171.061 kb on + strandat 171.092 kb on + strandat 171.141 kb on + strandat 171.142 kb on - strandat 171.142 kb on - strandat 171.144 kb on + strandat 171.146 kb on + strandat 171.147 kb on - strandat 171.171 kb on + strandat 171.207 kb on - strandat 171.254 kb on + strand, within BACOVA_01961at 171.255 kb on - strand, within BACOVA_01961at 171.333 kb on - strand, within BACOVA_01961at 171.340 kb on + strand, within BACOVA_01961at 171.341 kb on - strand, within BACOVA_01961at 171.341 kb on - strand, within BACOVA_01961at 171.342 kb on + strand, within BACOVA_01961at 171.343 kb on - strand, within BACOVA_01961at 171.364 kb on + strand, within BACOVA_01961at 171.365 kb on - strand, within BACOVA_01961at 171.438 kb on + strand, within BACOVA_01961at 171.442 kb on - strand, within BACOVA_01961at 171.442 kb on - strand, within BACOVA_01961at 171.488 kb on - strand, within BACOVA_01961at 171.514 kb on + strand, within BACOVA_01961at 171.529 kb on + strand, within BACOVA_01961at 171.529 kb on + strand, within BACOVA_01961at 171.531 kb on + strand, within BACOVA_01961at 171.531 kb on + strand, within BACOVA_01961at 171.532 kb on - strand, within BACOVA_01961at 171.595 kb on + strand, within BACOVA_01961at 171.595 kb on + strand, within BACOVA_01961at 171.618 kb on + strand, within BACOVA_01961at 171.622 kb on + strand, within BACOVA_01961at 171.627 kb on - strand, within BACOVA_01961at 171.627 kb on - strand, within BACOVA_01961at 171.680 kb on + strand, within BACOVA_01961at 171.682 kb on + strand, within BACOVA_01961at 171.683 kb on - strand, within BACOVA_01961at 171.736 kb on - strand, within BACOVA_01961at 171.786 kb on - strand, within BACOVA_01961at 171.795 kb on - strand, within BACOVA_01961at 171.822 kb on + strand, within BACOVA_01961

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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168,761 + BACOVA_01959 0.47 -2.9
168,762 - BACOVA_01959 0.47 -2.2
168,824 - BACOVA_01959 0.51 -2.0
168,824 - BACOVA_01959 0.51 -3.8
168,833 + BACOVA_01959 0.52 -5.7
168,856 + BACOVA_01959 0.53 -3.5
168,856 + BACOVA_01959 0.53 -2.8
168,857 - BACOVA_01959 0.53 -2.0
168,857 - BACOVA_01959 0.53 -3.2
168,861 - BACOVA_01959 0.53 -1.7
168,868 + BACOVA_01959 0.54 -1.6
168,868 + BACOVA_01959 0.54 -1.0
168,868 + BACOVA_01959 0.54 -3.3
168,868 + BACOVA_01959 0.54 -4.3
168,869 - BACOVA_01959 0.54 -0.7
168,869 - BACOVA_01959 0.54 -3.3
168,869 - BACOVA_01959 0.54 -1.7
168,926 + BACOVA_01959 0.58 -1.2
168,927 - BACOVA_01959 0.58 -3.6
168,927 - BACOVA_01959 0.58 -3.4
168,927 - BACOVA_01959 0.58 -3.1
168,929 + BACOVA_01959 0.58 -3.7
168,929 + BACOVA_01959 0.58 -4.1
169,000 + BACOVA_01959 0.62 -4.4
169,000 + BACOVA_01959 0.62 -2.7
169,033 + BACOVA_01959 0.65 -1.8
169,034 - BACOVA_01959 0.65 -4.7
169,044 + BACOVA_01959 0.65 -4.3
169,064 + BACOVA_01959 0.67 -2.9
169,065 - BACOVA_01959 0.67 -1.0
169,117 - BACOVA_01959 0.70 -2.4
169,260 + BACOVA_01959 0.80 -3.4
169,298 + BACOVA_01959 0.82 -0.8
169,343 + BACOVA_01959 0.85 -2.5
169,403 + BACOVA_01959 0.89 -2.9
169,404 - BACOVA_01959 0.89 -1.8
169,425 - -1.8
169,445 + -2.1
169,512 + -1.2
169,513 - -1.3
169,522 + -1.7
169,524 + -0.1
169,525 - -3.6
169,525 - -2.4
169,526 + -3.8
169,526 + -4.5
169,526 + -0.9
169,527 - -0.1
169,588 + -1.1
169,598 + +1.4
169,612 - -0.4
169,620 + +1.2
169,621 - +1.5
169,626 + +1.3
169,685 + -2.2
169,685 + +0.6
169,700 + +0.4
169,726 - -1.1
169,726 - -1.5
169,741 + -0.8
169,742 - -0.8
169,750 + -1.0
169,769 - -0.3
169,790 - -1.6
169,803 - +0.5
169,803 - +0.4
169,864 + -2.0
169,885 - BACOVA_01960 0.12 +1.4
169,890 + BACOVA_01960 0.12 +0.5
169,890 + BACOVA_01960 0.12 -0.5
169,950 + BACOVA_01960 0.17 -0.4
170,021 - BACOVA_01960 0.24 +0.5
170,023 + BACOVA_01960 0.24 +0.5
170,026 + BACOVA_01960 0.24 -2.2
170,109 + BACOVA_01960 0.31 +0.7
170,109 + BACOVA_01960 0.31 +0.3
170,109 + BACOVA_01960 0.31 +1.1
170,199 + BACOVA_01960 0.39 -1.9
170,199 + BACOVA_01960 0.39 -1.1
170,320 + BACOVA_01960 0.50 +0.9
170,320 + BACOVA_01960 0.50 -2.3
170,322 + BACOVA_01960 0.50 -1.1
170,322 + BACOVA_01960 0.50 -1.2
170,323 - BACOVA_01960 0.50 -1.0
170,323 - BACOVA_01960 0.50 +0.7
170,323 - BACOVA_01960 0.50 +1.3
170,391 + BACOVA_01960 0.56 -3.2
170,483 + BACOVA_01960 0.64 +1.1
170,484 - BACOVA_01960 0.64 -2.5
170,492 + BACOVA_01960 0.65 -2.1
170,507 - BACOVA_01960 0.66 -1.6
170,544 - BACOVA_01960 0.70 -2.4
170,594 + BACOVA_01960 0.74 -0.9
170,610 + BACOVA_01960 0.75 -0.3
170,655 - BACOVA_01960 0.79 -0.4
170,662 - BACOVA_01960 0.80 +0.6
170,670 + BACOVA_01960 0.81 -3.3
170,694 - BACOVA_01960 0.83 -1.9
170,694 - BACOVA_01960 0.83 -0.1
170,701 - BACOVA_01960 0.83 +1.0
170,972 + +0.9
170,973 - -0.7
170,973 - -0.8
170,973 - +0.9
170,973 - -0.1
171,021 + -0.8
171,022 - +0.1
171,061 + -0.8
171,092 + +3.7
171,141 + -1.3
171,142 - +0.0
171,142 - -3.1
171,144 + +0.1
171,146 + +1.3
171,147 - +0.4
171,171 + +1.9
171,207 - +3.5
171,254 + BACOVA_01961 0.11 +0.9
171,255 - BACOVA_01961 0.11 +0.6
171,333 - BACOVA_01961 0.14 +2.5
171,340 + BACOVA_01961 0.14 -1.0
171,341 - BACOVA_01961 0.14 -0.3
171,341 - BACOVA_01961 0.14 +0.3
171,342 + BACOVA_01961 0.14 +0.8
171,343 - BACOVA_01961 0.14 -1.0
171,364 + BACOVA_01961 0.15 +0.1
171,365 - BACOVA_01961 0.15 -0.3
171,438 + BACOVA_01961 0.17 +0.7
171,442 - BACOVA_01961 0.18 +2.8
171,442 - BACOVA_01961 0.18 +1.6
171,488 - BACOVA_01961 0.19 +0.3
171,514 + BACOVA_01961 0.20 +2.9
171,529 + BACOVA_01961 0.21 -0.0
171,529 + BACOVA_01961 0.21 +1.0
171,531 + BACOVA_01961 0.21 -1.7
171,531 + BACOVA_01961 0.21 +0.7
171,532 - BACOVA_01961 0.21 +2.5
171,595 + BACOVA_01961 0.23 +0.5
171,595 + BACOVA_01961 0.23 -0.0
171,618 + BACOVA_01961 0.24 -1.2
171,622 + BACOVA_01961 0.24 +1.8
171,627 - BACOVA_01961 0.24 +0.6
171,627 - BACOVA_01961 0.24 +0.2
171,680 + BACOVA_01961 0.26 +3.1
171,682 + BACOVA_01961 0.26 -0.4
171,683 - BACOVA_01961 0.26 -1.1
171,736 - BACOVA_01961 0.28 -1.4
171,786 - BACOVA_01961 0.30 -0.3
171,795 - BACOVA_01961 0.30 -1.0
171,822 + BACOVA_01961 0.31 +2.8

Or see this region's nucleotide sequence