Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01730 and BACOVA_01731 are separated by 151 nucleotides BACOVA_01731 and BACOVA_01732 overlap by 4 nucleotides BACOVA_01732 and BACOVA_01733 are separated by 34 nucleotides BACOVA_01733 and BACOVA_01734 are separated by 64 nucleotides BACOVA_01734 and BACOVA_01735 are separated by 9 nucleotides
BACOVA_01730: BACOVA_01730 - VirE N-terminal domain protein, at 155,381 to 156,010
_01730
BACOVA_01731: BACOVA_01731 - hypothetical protein, at 156,162 to 156,311
_01731
BACOVA_01732: BACOVA_01732 - hypothetical protein, at 156,308 to 156,427
_01732
BACOVA_01733: BACOVA_01733 - hypothetical protein, at 156,462 to 157,868
_01733
BACOVA_01734: BACOVA_01734 - hypothetical protein, at 157,933 to 158,739
_01734
BACOVA_01735: BACOVA_01735 - hypothetical protein, at 158,749 to 161,172
_01735
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 155.506 kb on - strand, within BACOVA_01730 at 155.521 kb on - strand, within BACOVA_01730 at 155.540 kb on - strand, within BACOVA_01730 at 155.586 kb on + strand, within BACOVA_01730 at 155.636 kb on + strand, within BACOVA_01730 at 155.681 kb on + strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.695 kb on - strand, within BACOVA_01730 at 155.717 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.791 kb on - strand, within BACOVA_01730 at 155.820 kb on - strand, within BACOVA_01730 at 155.920 kb on + strand, within BACOVA_01730 at 155.936 kb on - strand, within BACOVA_01730 at 155.985 kb on + strand at 155.986 kb on - strand at 156.011 kb on - strand at 156.021 kb on - strand at 156.021 kb on - strand at 156.095 kb on + strand at 156.222 kb on - strand, within BACOVA_01731 at 156.229 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.242 kb on + strand, within BACOVA_01731 at 156.248 kb on + strand, within BACOVA_01731 at 156.257 kb on - strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.260 kb on + strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.261 kb on - strand, within BACOVA_01731 at 156.276 kb on + strand, within BACOVA_01731 at 156.320 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.408 kb on - strand, within BACOVA_01732 at 156.426 kb on - strand at 156.482 kb on + strand at 156.485 kb on + strand at 156.494 kb on - strand at 156.535 kb on + strand at 156.586 kb on - strand at 156.586 kb on - strand at 156.593 kb on - strand at 156.593 kb on - strand at 156.625 kb on + strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.626 kb on - strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.630 kb on + strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.737 kb on - strand, within BACOVA_01733 at 156.895 kb on + strand, within BACOVA_01733 at 156.973 kb on + strand, within BACOVA_01733 at 157.014 kb on - strand, within BACOVA_01733 at 157.026 kb on + strand, within BACOVA_01733 at 157.027 kb on - strand, within BACOVA_01733 at 157.027 kb on - strand, within BACOVA_01733 at 157.056 kb on + strand, within BACOVA_01733 at 157.098 kb on - strand, within BACOVA_01733 at 157.098 kb on - strand, within BACOVA_01733 at 157.144 kb on - strand, within BACOVA_01733 at 157.346 kb on + strand, within BACOVA_01733 at 157.347 kb on - strand, within BACOVA_01733 at 157.351 kb on - strand, within BACOVA_01733 at 157.353 kb on - strand, within BACOVA_01733 at 157.353 kb on - strand, within BACOVA_01733 at 157.353 kb on - strand, within BACOVA_01733 at 157.449 kb on - strand, within BACOVA_01733 at 157.579 kb on + strand, within BACOVA_01733 at 157.580 kb on - strand, within BACOVA_01733 at 157.592 kb on + strand, within BACOVA_01733 at 157.642 kb on - strand, within BACOVA_01733 at 157.658 kb on + strand, within BACOVA_01733 at 157.659 kb on - strand, within BACOVA_01733 at 157.659 kb on - strand, within BACOVA_01733 at 157.779 kb on + strand at 157.780 kb on - strand at 157.782 kb on - strand at 157.811 kb on - strand at 157.813 kb on - strand at 157.813 kb on - strand at 157.822 kb on - strand at 157.834 kb on - strand at 157.836 kb on - strand at 157.854 kb on - strand at 157.864 kb on - strand at 157.910 kb on - strand at 157.917 kb on - strand at 157.924 kb on + strand at 157.924 kb on + strand at 157.925 kb on - strand at 157.967 kb on + strand at 158.001 kb on + strand at 158.002 kb on - strand at 158.002 kb on - strand at 158.026 kb on - strand, within BACOVA_01734 at 158.189 kb on + strand, within BACOVA_01734 at 158.225 kb on - strand, within BACOVA_01734 at 158.231 kb on + strand, within BACOVA_01734 at 158.232 kb on - strand, within BACOVA_01734 at 158.319 kb on - strand, within BACOVA_01734 at 158.322 kb on + strand, within BACOVA_01734 at 158.323 kb on - strand, within BACOVA_01734 at 158.357 kb on + strand, within BACOVA_01734 at 158.358 kb on - strand, within BACOVA_01734 at 158.373 kb on + strand, within BACOVA_01734 at 158.374 kb on - strand, within BACOVA_01734 at 158.423 kb on + strand, within BACOVA_01734 at 158.443 kb on - strand, within BACOVA_01734 at 158.485 kb on + strand, within BACOVA_01734 at 158.486 kb on - strand, within BACOVA_01734 at 158.490 kb on + strand, within BACOVA_01734 at 158.491 kb on - strand, within BACOVA_01734 at 158.551 kb on - strand, within BACOVA_01734 at 158.612 kb on + strand, within BACOVA_01734 at 158.612 kb on + strand, within BACOVA_01734 at 158.613 kb on - strand, within BACOVA_01734 at 158.632 kb on - strand, within BACOVA_01734 at 158.638 kb on - strand, within BACOVA_01734 at 158.638 kb on - strand, within BACOVA_01734 at 158.657 kb on + strand, within BACOVA_01734 at 158.657 kb on + strand, within BACOVA_01734 at 158.657 kb on + strand, within BACOVA_01734 at 158.658 kb on - strand, within BACOVA_01734 at 158.694 kb on + strand at 158.694 kb on + strand at 158.694 kb on + strand at 158.694 kb on + strand at 158.716 kb on - strand at 158.716 kb on - strand at 158.748 kb on - strand at 158.772 kb on + strand at 158.772 kb on + strand at 158.773 kb on - strand at 158.786 kb on + strand at 158.823 kb on + strand at 158.831 kb on + strand at 158.832 kb on - strand at 158.832 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 155,506 - BACOVA_01730 0.20 -0.1 155,521 - BACOVA_01730 0.22 +1.1 155,540 - BACOVA_01730 0.25 +1.1 155,586 + BACOVA_01730 0.33 +1.0 155,636 + BACOVA_01730 0.40 +1.3 155,681 + BACOVA_01730 0.48 +2.0 155,695 - BACOVA_01730 0.50 +1.7 155,695 - BACOVA_01730 0.50 +3.8 155,717 - BACOVA_01730 0.53 +0.3 155,791 - BACOVA_01730 0.65 +1.5 155,791 - BACOVA_01730 0.65 +3.2 155,791 - BACOVA_01730 0.65 +1.7 155,820 - BACOVA_01730 0.70 -0.1 155,920 + BACOVA_01730 0.86 -0.3 155,936 - BACOVA_01730 0.88 +1.1 155,985 + +1.6 155,986 - +0.3 156,011 - +0.1 156,021 - -1.0 156,021 - -1.0 156,095 + -1.3 156,222 - BACOVA_01731 0.40 -1.2 156,229 + BACOVA_01731 0.45 +1.1 156,242 + BACOVA_01731 0.53 +1.9 156,242 + BACOVA_01731 0.53 +0.5 156,248 + BACOVA_01731 0.57 +0.9 156,257 - BACOVA_01731 0.63 +0.4 156,260 + BACOVA_01731 0.65 +1.3 156,260 + BACOVA_01731 0.65 -0.4 156,261 - BACOVA_01731 0.66 -1.5 156,261 - BACOVA_01731 0.66 +0.5 156,276 + BACOVA_01731 0.76 -0.3 156,320 - BACOVA_01732 0.10 +1.1 156,408 - BACOVA_01732 0.83 +0.4 156,408 - BACOVA_01732 0.83 +0.6 156,426 - +0.1 156,482 + +0.1 156,485 + -0.3 156,494 - +0.7 156,535 + +0.9 156,586 - -1.4 156,586 - +0.1 156,593 - -2.9 156,593 - -0.2 156,625 + BACOVA_01733 0.12 +0.8 156,626 - BACOVA_01733 0.12 -0.1 156,626 - BACOVA_01733 0.12 -1.1 156,630 + BACOVA_01733 0.12 -0.7 156,630 + BACOVA_01733 0.12 -0.7 156,737 - BACOVA_01733 0.20 +0.6 156,737 - BACOVA_01733 0.20 -1.2 156,895 + BACOVA_01733 0.31 -0.8 156,973 + BACOVA_01733 0.36 -0.7 157,014 - BACOVA_01733 0.39 -1.5 157,026 + BACOVA_01733 0.40 -1.6 157,027 - BACOVA_01733 0.40 -1.9 157,027 - BACOVA_01733 0.40 -1.1 157,056 + BACOVA_01733 0.42 -1.4 157,098 - BACOVA_01733 0.45 -2.6 157,098 - BACOVA_01733 0.45 -1.2 157,144 - BACOVA_01733 0.48 +1.2 157,346 + BACOVA_01733 0.63 +0.8 157,347 - BACOVA_01733 0.63 -1.3 157,351 - BACOVA_01733 0.63 -1.0 157,353 - BACOVA_01733 0.63 +0.5 157,353 - BACOVA_01733 0.63 -3.5 157,353 - BACOVA_01733 0.63 -3.6 157,449 - BACOVA_01733 0.70 -1.5 157,579 + BACOVA_01733 0.79 +1.1 157,580 - BACOVA_01733 0.79 +0.4 157,592 + BACOVA_01733 0.80 -0.4 157,642 - BACOVA_01733 0.84 -0.1 157,658 + BACOVA_01733 0.85 -0.1 157,659 - BACOVA_01733 0.85 -2.1 157,659 - BACOVA_01733 0.85 +0.4 157,779 + +1.6 157,780 - -1.0 157,782 - -0.2 157,811 - +0.4 157,813 - -2.2 157,813 - +2.3 157,822 - +0.9 157,834 - +2.7 157,836 - -0.3 157,854 - +0.0 157,864 - +3.3 157,910 - -1.1 157,917 - -1.4 157,924 + +1.1 157,924 + -0.8 157,925 - +1.0 157,967 + -1.2 158,001 + -0.4 158,002 - -1.6 158,002 - +2.6 158,026 - BACOVA_01734 0.12 -0.3 158,189 + BACOVA_01734 0.32 -0.4 158,225 - BACOVA_01734 0.36 +1.4 158,231 + BACOVA_01734 0.37 -1.0 158,232 - BACOVA_01734 0.37 +0.1 158,319 - BACOVA_01734 0.48 +0.4 158,322 + BACOVA_01734 0.48 +0.6 158,323 - BACOVA_01734 0.48 +2.4 158,357 + BACOVA_01734 0.53 +0.6 158,358 - BACOVA_01734 0.53 +0.8 158,373 + BACOVA_01734 0.55 -0.3 158,374 - BACOVA_01734 0.55 -2.0 158,423 + BACOVA_01734 0.61 +1.1 158,443 - BACOVA_01734 0.63 +0.1 158,485 + BACOVA_01734 0.68 -0.6 158,486 - BACOVA_01734 0.69 +1.4 158,490 + BACOVA_01734 0.69 -0.9 158,491 - BACOVA_01734 0.69 -2.0 158,551 - BACOVA_01734 0.77 +0.6 158,612 + BACOVA_01734 0.84 +2.8 158,612 + BACOVA_01734 0.84 +0.9 158,613 - BACOVA_01734 0.84 -2.1 158,632 - BACOVA_01734 0.87 +1.4 158,638 - BACOVA_01734 0.87 +1.7 158,638 - BACOVA_01734 0.87 +1.3 158,657 + BACOVA_01734 0.90 +0.4 158,657 + BACOVA_01734 0.90 -1.4 158,657 + BACOVA_01734 0.90 -0.7 158,658 - BACOVA_01734 0.90 -1.6 158,694 + -1.0 158,694 + -0.3 158,694 + -0.2 158,694 + -0.1 158,716 - +1.5 158,716 - +1.5 158,748 - -1.9 158,772 + -1.0 158,772 + -3.4 158,773 - +0.9 158,786 + +0.7 158,823 + +0.1 158,831 + +2.2 158,832 - +1.5 158,832 - +2.2
Or see this region's nucleotide sequence