Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01549 and BACOVA_01550 are separated by 4 nucleotides BACOVA_01550 and BACOVA_01551 are separated by 88 nucleotides BACOVA_01551 and BACOVA_01552 are separated by 17 nucleotides
BACOVA_01549: BACOVA_01549 - hypothetical protein, at 49,472 to 50,788
_01549
BACOVA_01550: BACOVA_01550 - hypothetical protein, at 50,793 to 51,362
_01550
BACOVA_01551: BACOVA_01551 - hypothetical protein, at 51,451 to 51,612
_01551
BACOVA_01552: BACOVA_01552 - transcriptional regulator, AraC family, at 51,630 to 52,544
_01552
Position (kb)
51
52 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 50.503 kb on - strand, within BACOVA_01549 at 50.613 kb on - strand, within BACOVA_01549 at 50.687 kb on + strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.766 kb on + strand at 50.767 kb on - strand at 50.768 kb on + strand at 50.769 kb on - strand at 50.770 kb on + strand at 50.799 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.806 kb on + strand at 50.808 kb on + strand at 50.891 kb on - strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.974 kb on + strand, within BACOVA_01550 at 50.975 kb on - strand, within BACOVA_01550 at 51.026 kb on + strand, within BACOVA_01550 at 51.027 kb on - strand, within BACOVA_01550 at 51.058 kb on + strand, within BACOVA_01550 at 51.111 kb on + strand, within BACOVA_01550 at 51.118 kb on + strand, within BACOVA_01550 at 51.184 kb on + strand, within BACOVA_01550 at 51.185 kb on - strand, within BACOVA_01550 at 51.248 kb on + strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.249 kb on - strand, within BACOVA_01550 at 51.342 kb on + strand at 51.349 kb on - strand at 51.352 kb on + strand at 51.370 kb on + strand at 51.373 kb on + strand at 51.377 kb on + strand at 51.378 kb on - strand at 51.544 kb on - strand, within BACOVA_01551 at 51.545 kb on + strand, within BACOVA_01551 at 51.546 kb on - strand, within BACOVA_01551 at 51.547 kb on + strand, within BACOVA_01551 at 51.568 kb on - strand, within BACOVA_01551 at 51.663 kb on + strand at 51.664 kb on - strand at 51.693 kb on + strand at 51.724 kb on - strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.764 kb on + strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.765 kb on - strand, within BACOVA_01552 at 51.813 kb on - strand, within BACOVA_01552 at 51.860 kb on - strand, within BACOVA_01552 at 51.962 kb on - strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.982 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 51.999 kb on + strand, within BACOVA_01552 at 52.000 kb on - strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.240 kb on + strand, within BACOVA_01552 at 52.382 kb on - strand, within BACOVA_01552 at 52.382 kb on - strand, within BACOVA_01552 at 52.382 kb on - strand, within BACOVA_01552 at 52.382 kb on - strand, within BACOVA_01552 at 52.385 kb on + strand, within BACOVA_01552 at 52.385 kb on + strand, within BACOVA_01552 at 52.385 kb on + strand, within BACOVA_01552 at 52.385 kb on + strand, within BACOVA_01552 at 52.386 kb on - strand, within BACOVA_01552 at 52.386 kb on - strand, within BACOVA_01552 at 52.387 kb on + strand, within BACOVA_01552 at 52.387 kb on + strand, within BACOVA_01552 at 52.453 kb on - strand at 52.453 kb on - strand at 52.453 kb on - strand at 52.503 kb on + strand at 52.512 kb on + strand at 52.520 kb on + strand at 52.520 kb on + strand at 52.526 kb on + strand at 52.526 kb on + strand at 52.536 kb on - strand at 52.553 kb on - strand at 52.574 kb on - strand at 52.578 kb on + strand at 52.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 50,503 - BACOVA_01549 0.78 +2.3 50,613 - BACOVA_01549 0.87 +0.7 50,687 + +1.2 50,714 - +0.1 50,714 - +0.1 50,766 + -0.2 50,766 + -1.3 50,766 + -0.8 50,767 - -0.5 50,768 + -1.0 50,769 - -2.0 50,770 + +0.2 50,799 + -2.1 50,806 + -1.0 50,806 + -1.7 50,806 + +1.1 50,808 + -1.0 50,891 - BACOVA_01550 0.17 +1.2 50,974 + BACOVA_01550 0.32 +1.4 50,974 + BACOVA_01550 0.32 +0.5 50,975 - BACOVA_01550 0.32 +4.0 51,026 + BACOVA_01550 0.41 +0.9 51,027 - BACOVA_01550 0.41 +0.8 51,058 + BACOVA_01550 0.46 -2.5 51,111 + BACOVA_01550 0.56 +1.4 51,118 + BACOVA_01550 0.57 +1.3 51,184 + BACOVA_01550 0.69 -1.8 51,185 - BACOVA_01550 0.69 -1.4 51,248 + BACOVA_01550 0.80 +0.4 51,249 - BACOVA_01550 0.80 +2.7 51,249 - BACOVA_01550 0.80 -0.6 51,249 - BACOVA_01550 0.80 +2.0 51,342 + +3.0 51,349 - +0.9 51,352 + -0.7 51,370 + +0.3 51,373 + +0.8 51,377 + +0.7 51,378 - +3.3 51,544 - BACOVA_01551 0.57 +2.4 51,545 + BACOVA_01551 0.58 -0.3 51,546 - BACOVA_01551 0.59 +3.5 51,547 + BACOVA_01551 0.59 -2.0 51,568 - BACOVA_01551 0.72 +0.1 51,663 + -1.9 51,664 - -1.8 51,693 + +0.5 51,724 - BACOVA_01552 0.10 +1.4 51,764 + BACOVA_01552 0.15 +1.1 51,764 + BACOVA_01552 0.15 -0.5 51,765 - BACOVA_01552 0.15 +1.9 51,765 - BACOVA_01552 0.15 +2.7 51,813 - BACOVA_01552 0.20 -0.7 51,860 - BACOVA_01552 0.25 +1.7 51,962 - BACOVA_01552 0.36 -1.2 51,982 + BACOVA_01552 0.38 -2.4 51,982 + BACOVA_01552 0.38 -1.6 51,999 + BACOVA_01552 0.40 -1.2 51,999 + BACOVA_01552 0.40 -1.0 52,000 - BACOVA_01552 0.40 -0.6 52,240 + BACOVA_01552 0.67 +0.8 52,240 + BACOVA_01552 0.67 -0.3 52,240 + BACOVA_01552 0.67 -1.7 52,240 + BACOVA_01552 0.67 -2.8 52,382 - BACOVA_01552 0.82 -2.0 52,382 - BACOVA_01552 0.82 +0.1 52,382 - BACOVA_01552 0.82 -0.4 52,382 - BACOVA_01552 0.82 -0.5 52,385 + BACOVA_01552 0.83 -1.9 52,385 + BACOVA_01552 0.83 -0.0 52,385 + BACOVA_01552 0.83 -2.4 52,385 + BACOVA_01552 0.83 +0.8 52,386 - BACOVA_01552 0.83 +0.7 52,386 - BACOVA_01552 0.83 -0.1 52,387 + BACOVA_01552 0.83 +1.1 52,387 + BACOVA_01552 0.83 -1.9 52,453 - -1.9 52,453 - -0.9 52,453 - +0.7 52,503 + +1.1 52,512 + -1.5 52,520 + +1.4 52,520 + -0.9 52,526 + -2.7 52,526 + -2.4 52,536 - -0.8 52,553 - +1.5 52,574 - +1.7 52,578 + -1.1 52,582 + -1.4
Or see this region's nucleotide sequence