Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01246 and BACOVA_01247 are separated by 27 nucleotides BACOVA_01247 and BACOVA_01248 are separated by 23 nucleotides
BACOVA_01246: BACOVA_01246 - PQQ enzyme repeat protein, at 28,538 to 30,502
_01246
BACOVA_01247: BACOVA_01247 - SusD family protein, at 30,530 to 31,921
_01247
BACOVA_01248: BACOVA_01248 - TonB-linked outer membrane protein, SusC/RagA family, at 31,945 to 35,388
_01248
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 29.539 kb on - strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.582 kb on + strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.583 kb on - strand, within BACOVA_01246 at 29.630 kb on - strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.674 kb on + strand, within BACOVA_01246 at 29.675 kb on - strand, within BACOVA_01246 at 29.677 kb on + strand, within BACOVA_01246 at 29.683 kb on - strand, within BACOVA_01246 at 29.683 kb on - strand, within BACOVA_01246 at 29.705 kb on - strand, within BACOVA_01246 at 29.705 kb on - strand, within BACOVA_01246 at 29.706 kb on + strand, within BACOVA_01246 at 29.706 kb on + strand, within BACOVA_01246 at 29.711 kb on - strand, within BACOVA_01246 at 29.720 kb on - strand, within BACOVA_01246 at 29.723 kb on + strand, within BACOVA_01246 at 29.723 kb on - strand, within BACOVA_01246 at 29.723 kb on - strand, within BACOVA_01246 at 29.759 kb on - strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.808 kb on + strand, within BACOVA_01246 at 29.809 kb on - strand, within BACOVA_01246 at 29.809 kb on - strand, within BACOVA_01246 at 29.812 kb on + strand, within BACOVA_01246 at 29.812 kb on + strand, within BACOVA_01246 at 29.813 kb on - strand, within BACOVA_01246 at 29.813 kb on - strand, within BACOVA_01246 at 29.874 kb on + strand, within BACOVA_01246 at 29.874 kb on + strand, within BACOVA_01246 at 29.891 kb on - strand, within BACOVA_01246 at 29.939 kb on + strand, within BACOVA_01246 at 29.940 kb on - strand, within BACOVA_01246 at 29.950 kb on + strand, within BACOVA_01246 at 29.951 kb on - strand, within BACOVA_01246 at 29.951 kb on - strand, within BACOVA_01246 at 29.986 kb on - strand, within BACOVA_01246 at 29.986 kb on - strand, within BACOVA_01246 at 30.001 kb on + strand, within BACOVA_01246 at 30.002 kb on - strand, within BACOVA_01246 at 30.167 kb on - strand, within BACOVA_01246 at 30.349 kb on - strand at 30.349 kb on - strand at 30.376 kb on + strand at 30.377 kb on - strand at 30.411 kb on + strand at 30.414 kb on - strand at 30.484 kb on + strand at 30.486 kb on + strand at 30.488 kb on + strand at 30.489 kb on - strand at 30.522 kb on + strand at 30.529 kb on - strand at 30.532 kb on - strand at 30.532 kb on - strand at 30.595 kb on + strand at 30.612 kb on + strand at 30.622 kb on + strand at 30.622 kb on + strand at 30.644 kb on - strand at 30.652 kb on + strand at 30.724 kb on + strand, within BACOVA_01247 at 30.725 kb on - strand, within BACOVA_01247 at 30.764 kb on + strand, within BACOVA_01247 at 30.793 kb on + strand, within BACOVA_01247 at 30.817 kb on + strand, within BACOVA_01247 at 30.817 kb on + strand, within BACOVA_01247 at 30.839 kb on - strand, within BACOVA_01247 at 30.844 kb on - strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.870 kb on + strand, within BACOVA_01247 at 30.901 kb on + strand, within BACOVA_01247 at 30.922 kb on + strand, within BACOVA_01247 at 30.925 kb on + strand, within BACOVA_01247 at 30.926 kb on - strand, within BACOVA_01247 at 30.927 kb on + strand, within BACOVA_01247 at 30.928 kb on - strand, within BACOVA_01247 at 30.928 kb on - strand, within BACOVA_01247 at 30.956 kb on - strand, within BACOVA_01247 at 30.968 kb on + strand, within BACOVA_01247 at 30.969 kb on - strand, within BACOVA_01247 at 30.969 kb on - strand, within BACOVA_01247 at 30.986 kb on + strand, within BACOVA_01247 at 30.990 kb on + strand, within BACOVA_01247 at 30.990 kb on + strand, within BACOVA_01247 at 30.991 kb on - strand, within BACOVA_01247 at 30.994 kb on + strand, within BACOVA_01247 at 31.026 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.078 kb on + strand, within BACOVA_01247 at 31.089 kb on + strand, within BACOVA_01247 at 31.089 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.319 kb on + strand, within BACOVA_01247 at 31.320 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.322 kb on - strand, within BACOVA_01247 at 31.339 kb on + strand, within BACOVA_01247 at 31.340 kb on - strand, within BACOVA_01247 at 31.340 kb on - strand, within BACOVA_01247 at 31.348 kb on + strand, within BACOVA_01247 at 31.444 kb on + strand, within BACOVA_01247 at 31.473 kb on + strand, within BACOVA_01247 at 31.478 kb on - strand, within BACOVA_01247 at 31.478 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.481 kb on - strand, within BACOVA_01247 at 31.485 kb on + strand, within BACOVA_01247 at 31.489 kb on + strand, within BACOVA_01247 at 31.501 kb on + strand, within BACOVA_01247 at 31.564 kb on + strand, within BACOVA_01247 at 31.565 kb on - strand, within BACOVA_01247 at 31.568 kb on + strand, within BACOVA_01247 at 31.571 kb on + strand, within BACOVA_01247 at 31.587 kb on + strand, within BACOVA_01247 at 31.597 kb on + strand, within BACOVA_01247 at 31.709 kb on - strand, within BACOVA_01247 at 31.767 kb on + strand, within BACOVA_01247 at 31.767 kb on + strand, within BACOVA_01247 at 31.785 kb on - strand at 31.789 kb on + strand at 31.807 kb on + strand at 31.807 kb on + strand at 31.807 kb on + strand at 31.810 kb on - strand at 31.811 kb on + strand at 31.812 kb on - strand at 31.812 kb on - strand at 31.834 kb on + strand at 31.858 kb on + strand at 31.859 kb on - strand at 31.899 kb on - strand at 31.901 kb on + strand at 31.905 kb on - strand at 31.954 kb on + strand at 31.980 kb on + strand at 31.980 kb on + strand at 31.991 kb on + strand at 31.992 kb on - strand at 32.001 kb on - strand at 32.052 kb on + strand at 32.061 kb on + strand at 32.067 kb on + strand at 32.100 kb on - strand at 32.151 kb on + strand at 32.159 kb on - strand at 32.183 kb on + strand at 32.184 kb on - strand at 32.224 kb on - strand at 32.225 kb on + strand at 32.302 kb on + strand, within BACOVA_01248 at 32.303 kb on - strand, within BACOVA_01248 at 32.304 kb on + strand, within BACOVA_01248 at 32.318 kb on + strand, within BACOVA_01248 at 32.323 kb on - strand, within BACOVA_01248 at 32.343 kb on - strand, within BACOVA_01248 at 32.377 kb on + strand, within BACOVA_01248 at 32.378 kb on - strand, within BACOVA_01248 at 32.413 kb on - strand, within BACOVA_01248 at 32.454 kb on + strand, within BACOVA_01248 at 32.454 kb on + strand, within BACOVA_01248 at 32.456 kb on + strand, within BACOVA_01248 at 32.456 kb on + strand, within BACOVA_01248 at 32.456 kb on + strand, within BACOVA_01248 at 32.457 kb on - strand, within BACOVA_01248 at 32.489 kb on + strand, within BACOVA_01248 at 32.541 kb on + strand, within BACOVA_01248 at 32.609 kb on + strand, within BACOVA_01248 at 32.609 kb on + strand, within BACOVA_01248 at 32.613 kb on - strand, within BACOVA_01248 at 32.660 kb on - strand, within BACOVA_01248 at 32.674 kb on + strand, within BACOVA_01248 at 32.674 kb on + strand, within BACOVA_01248 at 32.675 kb on - strand, within BACOVA_01248 at 32.679 kb on + strand, within BACOVA_01248 at 32.719 kb on - strand, within BACOVA_01248 at 32.719 kb on - strand, within BACOVA_01248 at 32.739 kb on + strand, within BACOVA_01248 at 32.764 kb on + strand, within BACOVA_01248 at 32.877 kb on + strand, within BACOVA_01248 at 32.877 kb on + strand, within BACOVA_01248 at 32.892 kb on + strand, within BACOVA_01248 at 32.892 kb on + strand, within BACOVA_01248 at 32.893 kb on - strand, within BACOVA_01248 at 32.896 kb on - strand, within BACOVA_01248 at 32.898 kb on - strand, within BACOVA_01248
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 29,539 - BACOVA_01246 0.51 -1.1 29,582 + BACOVA_01246 0.53 +1.0 29,582 + BACOVA_01246 0.53 +1.9 29,582 + BACOVA_01246 0.53 +1.3 29,583 - BACOVA_01246 0.53 +0.4 29,583 - BACOVA_01246 0.53 +0.5 29,583 - BACOVA_01246 0.53 +1.7 29,583 - BACOVA_01246 0.53 -1.3 29,630 - BACOVA_01246 0.56 +0.8 29,674 + BACOVA_01246 0.58 +0.3 29,674 + BACOVA_01246 0.58 -0.5 29,674 + BACOVA_01246 0.58 +0.3 29,675 - BACOVA_01246 0.58 +1.5 29,677 + BACOVA_01246 0.58 -0.5 29,683 - BACOVA_01246 0.58 -1.3 29,683 - BACOVA_01246 0.58 +1.3 29,705 - BACOVA_01246 0.59 +0.8 29,705 - BACOVA_01246 0.59 +2.1 29,706 + BACOVA_01246 0.59 -1.5 29,706 + BACOVA_01246 0.59 -0.3 29,711 - BACOVA_01246 0.60 -0.8 29,720 - BACOVA_01246 0.60 +0.5 29,723 + BACOVA_01246 0.60 -0.7 29,723 - BACOVA_01246 0.60 -1.4 29,723 - BACOVA_01246 0.60 +1.4 29,759 - BACOVA_01246 0.62 -2.1 29,808 + BACOVA_01246 0.65 +0.9 29,808 + BACOVA_01246 0.65 +1.0 29,808 + BACOVA_01246 0.65 +2.9 29,809 - BACOVA_01246 0.65 -1.6 29,809 - BACOVA_01246 0.65 +0.0 29,812 + BACOVA_01246 0.65 +0.2 29,812 + BACOVA_01246 0.65 -2.6 29,813 - BACOVA_01246 0.65 +0.5 29,813 - BACOVA_01246 0.65 +0.8 29,874 + BACOVA_01246 0.68 +0.6 29,874 + BACOVA_01246 0.68 +0.4 29,891 - BACOVA_01246 0.69 -0.9 29,939 + BACOVA_01246 0.71 -0.5 29,940 - BACOVA_01246 0.71 -0.2 29,950 + BACOVA_01246 0.72 +3.3 29,951 - BACOVA_01246 0.72 -0.4 29,951 - BACOVA_01246 0.72 -0.5 29,986 - BACOVA_01246 0.74 +2.9 29,986 - BACOVA_01246 0.74 -0.7 30,001 + BACOVA_01246 0.74 -0.0 30,002 - BACOVA_01246 0.75 +0.0 30,167 - BACOVA_01246 0.83 -2.9 30,349 - +0.9 30,349 - +1.5 30,376 + +1.1 30,377 - +0.7 30,411 + -2.2 30,414 - -1.2 30,484 + +2.3 30,486 + +0.7 30,488 + +0.8 30,489 - -0.4 30,522 + -1.3 30,529 - -0.7 30,532 - +0.2 30,532 - +2.0 30,595 + +0.0 30,612 + -0.4 30,622 + +0.5 30,622 + -0.6 30,644 - +0.4 30,652 + +2.0 30,724 + BACOVA_01247 0.14 -0.4 30,725 - BACOVA_01247 0.14 +3.4 30,764 + BACOVA_01247 0.17 +0.2 30,793 + BACOVA_01247 0.19 -1.6 30,817 + BACOVA_01247 0.21 -1.1 30,817 + BACOVA_01247 0.21 -1.3 30,839 - BACOVA_01247 0.22 +1.8 30,844 - BACOVA_01247 0.23 -0.4 30,870 + BACOVA_01247 0.24 -1.0 30,870 + BACOVA_01247 0.24 -2.5 30,870 + BACOVA_01247 0.24 -3.0 30,901 + BACOVA_01247 0.27 +3.4 30,922 + BACOVA_01247 0.28 +2.2 30,925 + BACOVA_01247 0.28 -2.0 30,926 - BACOVA_01247 0.28 +2.3 30,927 + BACOVA_01247 0.29 -0.6 30,928 - BACOVA_01247 0.29 +0.2 30,928 - BACOVA_01247 0.29 -0.7 30,956 - BACOVA_01247 0.31 +1.5 30,968 + BACOVA_01247 0.31 +1.6 30,969 - BACOVA_01247 0.32 +2.0 30,969 - BACOVA_01247 0.32 +0.2 30,986 + BACOVA_01247 0.33 -1.2 30,990 + BACOVA_01247 0.33 -1.1 30,990 + BACOVA_01247 0.33 -0.9 30,991 - BACOVA_01247 0.33 -1.9 30,994 + BACOVA_01247 0.33 +1.4 31,026 + BACOVA_01247 0.36 +2.2 31,078 + BACOVA_01247 0.39 -0.7 31,078 + BACOVA_01247 0.39 +0.8 31,078 + BACOVA_01247 0.39 +0.7 31,078 + BACOVA_01247 0.39 +1.1 31,089 + BACOVA_01247 0.40 +1.5 31,089 + BACOVA_01247 0.40 -1.5 31,319 + BACOVA_01247 0.57 -0.8 31,319 + BACOVA_01247 0.57 -1.3 31,319 + BACOVA_01247 0.57 -0.4 31,320 - BACOVA_01247 0.57 +2.5 31,322 - BACOVA_01247 0.57 -0.9 31,322 - BACOVA_01247 0.57 -0.5 31,322 - BACOVA_01247 0.57 +0.9 31,339 + BACOVA_01247 0.58 -1.8 31,340 - BACOVA_01247 0.58 -1.7 31,340 - BACOVA_01247 0.58 -0.2 31,348 + BACOVA_01247 0.59 -1.5 31,444 + BACOVA_01247 0.66 +1.7 31,473 + BACOVA_01247 0.68 -1.3 31,478 - BACOVA_01247 0.68 +0.5 31,478 - BACOVA_01247 0.68 +1.2 31,481 - BACOVA_01247 0.68 +2.0 31,481 - BACOVA_01247 0.68 +0.3 31,481 - BACOVA_01247 0.68 -0.5 31,485 + BACOVA_01247 0.69 +2.0 31,489 + BACOVA_01247 0.69 +1.1 31,501 + BACOVA_01247 0.70 +0.6 31,564 + BACOVA_01247 0.74 +2.2 31,565 - BACOVA_01247 0.74 +0.5 31,568 + BACOVA_01247 0.75 -0.7 31,571 + BACOVA_01247 0.75 +2.1 31,587 + BACOVA_01247 0.76 +0.4 31,597 + BACOVA_01247 0.77 -0.8 31,709 - BACOVA_01247 0.85 +0.3 31,767 + BACOVA_01247 0.89 +0.9 31,767 + BACOVA_01247 0.89 -0.1 31,785 - -2.0 31,789 + +3.9 31,807 + -1.1 31,807 + +0.8 31,807 + -0.9 31,810 - -0.5 31,811 + +0.8 31,812 - -3.1 31,812 - -0.5 31,834 + -0.9 31,858 + +1.2 31,859 - -2.2 31,899 - +0.5 31,901 + -0.9 31,905 - -0.5 31,954 + -2.0 31,980 + -2.0 31,980 + -0.1 31,991 + +0.6 31,992 - +0.1 32,001 - +0.4 32,052 + -0.6 32,061 + -1.0 32,067 + -1.2 32,100 - +1.0 32,151 + -1.0 32,159 - -0.2 32,183 + -0.6 32,184 - +0.2 32,224 - -1.6 32,225 + -1.4 32,302 + BACOVA_01248 0.10 -1.3 32,303 - BACOVA_01248 0.10 -2.0 32,304 + BACOVA_01248 0.10 -0.0 32,318 + BACOVA_01248 0.11 -0.2 32,323 - BACOVA_01248 0.11 -1.3 32,343 - BACOVA_01248 0.12 +1.4 32,377 + BACOVA_01248 0.13 -1.0 32,378 - BACOVA_01248 0.13 -1.8 32,413 - BACOVA_01248 0.14 +0.8 32,454 + BACOVA_01248 0.15 -0.2 32,454 + BACOVA_01248 0.15 +0.1 32,456 + BACOVA_01248 0.15 -1.5 32,456 + BACOVA_01248 0.15 +1.5 32,456 + BACOVA_01248 0.15 +0.3 32,457 - BACOVA_01248 0.15 -0.9 32,489 + BACOVA_01248 0.16 -2.6 32,541 + BACOVA_01248 0.17 -0.4 32,609 + BACOVA_01248 0.19 +3.0 32,609 + BACOVA_01248 0.19 +1.5 32,613 - BACOVA_01248 0.19 -1.0 32,660 - BACOVA_01248 0.21 -0.0 32,674 + BACOVA_01248 0.21 +1.0 32,674 + BACOVA_01248 0.21 -1.7 32,675 - BACOVA_01248 0.21 -2.1 32,679 + BACOVA_01248 0.21 +0.1 32,719 - BACOVA_01248 0.22 +1.1 32,719 - BACOVA_01248 0.22 +1.3 32,739 + BACOVA_01248 0.23 -0.2 32,764 + BACOVA_01248 0.24 +0.6 32,877 + BACOVA_01248 0.27 -1.5 32,877 + BACOVA_01248 0.27 -1.5 32,892 + BACOVA_01248 0.27 -0.2 32,892 + BACOVA_01248 0.27 -0.5 32,893 - BACOVA_01248 0.28 -1.5 32,896 - BACOVA_01248 0.28 +0.6 32,898 - BACOVA_01248 0.28 +1.2
Or see this region's nucleotide sequence