Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00866 and BACOVA_00867 are separated by 157 nucleotides BACOVA_00867 and BACOVA_00869 are separated by 11 nucleotides BACOVA_00869 and BACOVA_00868 overlap by 31 nucleotides
BACOVA_00866: BACOVA_00866 - TonB-linked outer membrane protein, SusC/RagA family, at 119,934 to 123,062
_00866
BACOVA_00867: BACOVA_00867 - hypothetical protein, at 123,220 to 124,329
_00867
BACOVA_00869: BACOVA_00869 - hypothetical protein, at 124,341 to 124,448
_00869
BACOVA_00868: BACOVA_00868 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 124,418 to 126,832
_00868
Position (kb)
123
124
125 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 122.273 kb on - strand, within BACOVA_00866 at 122.273 kb on - strand, within BACOVA_00866 at 122.326 kb on - strand, within BACOVA_00866 at 122.387 kb on + strand, within BACOVA_00866 at 122.387 kb on + strand, within BACOVA_00866 at 122.387 kb on + strand, within BACOVA_00866 at 122.388 kb on - strand, within BACOVA_00866 at 122.446 kb on - strand, within BACOVA_00866 at 122.460 kb on + strand, within BACOVA_00866 at 122.460 kb on + strand, within BACOVA_00866 at 122.460 kb on + strand, within BACOVA_00866 at 122.514 kb on + strand, within BACOVA_00866 at 122.515 kb on - strand, within BACOVA_00866 at 122.518 kb on + strand, within BACOVA_00866 at 122.519 kb on - strand, within BACOVA_00866 at 122.544 kb on - strand, within BACOVA_00866 at 122.544 kb on - strand, within BACOVA_00866 at 122.579 kb on + strand, within BACOVA_00866 at 122.580 kb on - strand, within BACOVA_00866 at 122.709 kb on - strand, within BACOVA_00866 at 122.728 kb on + strand, within BACOVA_00866 at 122.728 kb on + strand, within BACOVA_00866 at 122.733 kb on + strand, within BACOVA_00866 at 122.734 kb on - strand, within BACOVA_00866 at 122.734 kb on - strand, within BACOVA_00866 at 122.742 kb on + strand, within BACOVA_00866 at 122.743 kb on - strand, within BACOVA_00866 at 122.759 kb on + strand at 122.760 kb on - strand at 122.783 kb on + strand at 122.783 kb on + strand at 122.784 kb on - strand at 122.784 kb on - strand at 122.784 kb on - strand at 122.830 kb on - strand at 122.844 kb on + strand at 122.844 kb on + strand at 122.845 kb on - strand at 122.845 kb on - strand at 122.925 kb on + strand at 122.926 kb on - strand at 123.001 kb on + strand at 123.002 kb on - strand at 123.003 kb on + strand at 123.004 kb on - strand at 123.007 kb on - strand at 123.007 kb on - strand at 123.008 kb on + strand at 123.009 kb on - strand at 123.042 kb on + strand at 123.096 kb on - strand at 123.096 kb on - strand at 123.096 kb on - strand at 123.154 kb on + strand at 123.159 kb on + strand at 123.160 kb on - strand at 123.177 kb on + strand at 123.178 kb on - strand at 123.198 kb on - strand at 123.201 kb on + strand at 123.202 kb on - strand at 123.203 kb on + strand at 123.240 kb on + strand at 123.240 kb on - strand at 123.240 kb on - strand at 123.312 kb on + strand at 123.313 kb on - strand at 123.403 kb on + strand, within BACOVA_00867 at 123.403 kb on + strand, within BACOVA_00867 at 123.403 kb on + strand, within BACOVA_00867 at 123.404 kb on - strand, within BACOVA_00867 at 123.423 kb on + strand, within BACOVA_00867 at 123.424 kb on - strand, within BACOVA_00867 at 123.442 kb on - strand, within BACOVA_00867 at 123.471 kb on + strand, within BACOVA_00867 at 123.534 kb on - strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.578 kb on + strand, within BACOVA_00867 at 123.628 kb on + strand, within BACOVA_00867 at 123.644 kb on + strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.645 kb on - strand, within BACOVA_00867 at 123.647 kb on - strand, within BACOVA_00867 at 123.698 kb on - strand, within BACOVA_00867 at 123.709 kb on - strand, within BACOVA_00867 at 123.741 kb on + strand, within BACOVA_00867 at 123.742 kb on - strand, within BACOVA_00867 at 123.745 kb on + strand, within BACOVA_00867 at 123.746 kb on - strand, within BACOVA_00867 at 123.774 kb on - strand, within BACOVA_00867 at 123.778 kb on - strand, within BACOVA_00867 at 123.795 kb on - strand, within BACOVA_00867 at 123.797 kb on - strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.799 kb on + strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.800 kb on - strand, within BACOVA_00867 at 123.873 kb on + strand, within BACOVA_00867 at 123.874 kb on - strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.879 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.924 kb on + strand, within BACOVA_00867 at 123.925 kb on - strand, within BACOVA_00867 at 124.004 kb on + strand, within BACOVA_00867 at 124.082 kb on - strand, within BACOVA_00867 at 124.175 kb on - strand, within BACOVA_00867 at 124.192 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.196 kb on + strand, within BACOVA_00867 at 124.197 kb on - strand, within BACOVA_00867 at 124.222 kb on + strand at 124.229 kb on - strand at 124.250 kb on + strand at 124.280 kb on - strand at 124.280 kb on - strand at 124.313 kb on - strand at 124.378 kb on + strand, within BACOVA_00869 at 124.438 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.491 kb on - strand at 124.508 kb on - strand at 124.548 kb on + strand at 124.549 kb on - strand at 124.552 kb on - strand at 124.588 kb on + strand at 124.589 kb on - strand at 124.595 kb on + strand at 124.606 kb on + strand at 124.654 kb on - strand at 124.727 kb on - strand, within BACOVA_00868 at 124.830 kb on - strand, within BACOVA_00868 at 124.964 kb on - strand, within BACOVA_00868 at 124.988 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 124.990 kb on + strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.093 kb on - strand, within BACOVA_00868 at 125.134 kb on + strand, within BACOVA_00868 at 125.184 kb on + strand, within BACOVA_00868 at 125.210 kb on - strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.290 kb on + strand, within BACOVA_00868 at 125.291 kb on - strand, within BACOVA_00868 at 125.302 kb on + strand, within BACOVA_00868
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 122,273 - BACOVA_00866 0.75 +1.0 122,273 - BACOVA_00866 0.75 -3.6 122,326 - BACOVA_00866 0.76 -0.5 122,387 + BACOVA_00866 0.78 -1.0 122,387 + BACOVA_00866 0.78 +0.7 122,387 + BACOVA_00866 0.78 -1.5 122,388 - BACOVA_00866 0.78 -1.9 122,446 - BACOVA_00866 0.80 +1.1 122,460 + BACOVA_00866 0.81 -1.5 122,460 + BACOVA_00866 0.81 -1.9 122,460 + BACOVA_00866 0.81 -0.5 122,514 + BACOVA_00866 0.82 -1.3 122,515 - BACOVA_00866 0.82 +1.8 122,518 + BACOVA_00866 0.83 +0.7 122,519 - BACOVA_00866 0.83 -0.3 122,544 - BACOVA_00866 0.83 -1.7 122,544 - BACOVA_00866 0.83 +1.4 122,579 + BACOVA_00866 0.85 -1.9 122,580 - BACOVA_00866 0.85 -1.3 122,709 - BACOVA_00866 0.89 +1.0 122,728 + BACOVA_00866 0.89 -1.3 122,728 + BACOVA_00866 0.89 -1.0 122,733 + BACOVA_00866 0.89 +2.2 122,734 - BACOVA_00866 0.89 +2.0 122,734 - BACOVA_00866 0.89 -2.0 122,742 + BACOVA_00866 0.90 -0.1 122,743 - BACOVA_00866 0.90 -0.1 122,759 + -0.1 122,760 - +0.3 122,783 + -1.4 122,783 + -2.1 122,784 - +0.5 122,784 - +1.1 122,784 - -2.0 122,830 - +0.5 122,844 + -0.2 122,844 + -0.0 122,845 - -1.5 122,845 - -1.2 122,925 + -0.4 122,926 - -1.2 123,001 + -0.7 123,002 - +0.6 123,003 + -1.0 123,004 - +0.2 123,007 - +2.1 123,007 - -0.8 123,008 + -2.5 123,009 - +0.9 123,042 + -0.7 123,096 - +0.2 123,096 - -0.5 123,096 - +0.6 123,154 + +1.0 123,159 + -0.2 123,160 - +1.8 123,177 + -2.0 123,178 - +0.8 123,198 - -1.6 123,201 + -4.1 123,202 - +0.7 123,203 + -2.1 123,240 + -0.3 123,240 - -1.3 123,240 - -0.5 123,312 + -3.0 123,313 - +1.4 123,403 + BACOVA_00867 0.16 +1.0 123,403 + BACOVA_00867 0.16 -4.0 123,403 + BACOVA_00867 0.16 +2.0 123,404 - BACOVA_00867 0.17 -1.7 123,423 + BACOVA_00867 0.18 +1.0 123,424 - BACOVA_00867 0.18 +0.7 123,442 - BACOVA_00867 0.20 -0.4 123,471 + BACOVA_00867 0.23 -2.5 123,534 - BACOVA_00867 0.28 -0.9 123,578 + BACOVA_00867 0.32 -1.9 123,578 + BACOVA_00867 0.32 -0.8 123,628 + BACOVA_00867 0.37 +2.1 123,644 + BACOVA_00867 0.38 +1.0 123,645 - BACOVA_00867 0.38 -2.6 123,645 - BACOVA_00867 0.38 +4.4 123,647 - BACOVA_00867 0.38 -1.5 123,698 - BACOVA_00867 0.43 +0.1 123,709 - BACOVA_00867 0.44 -0.2 123,741 + BACOVA_00867 0.47 +0.5 123,742 - BACOVA_00867 0.47 -0.8 123,745 + BACOVA_00867 0.47 +0.6 123,746 - BACOVA_00867 0.47 -0.5 123,774 - BACOVA_00867 0.50 -1.9 123,778 - BACOVA_00867 0.50 -1.5 123,795 - BACOVA_00867 0.52 +0.4 123,797 - BACOVA_00867 0.52 -0.8 123,799 + BACOVA_00867 0.52 +0.5 123,799 + BACOVA_00867 0.52 +1.8 123,800 - BACOVA_00867 0.52 -0.9 123,800 - BACOVA_00867 0.52 -0.2 123,800 - BACOVA_00867 0.52 -1.3 123,800 - BACOVA_00867 0.52 +0.0 123,873 + BACOVA_00867 0.59 -0.2 123,874 - BACOVA_00867 0.59 +0.7 123,879 + BACOVA_00867 0.59 +0.1 123,879 + BACOVA_00867 0.59 -0.0 123,924 + BACOVA_00867 0.63 +2.0 123,924 + BACOVA_00867 0.63 +0.5 123,925 - BACOVA_00867 0.64 +0.9 124,004 + BACOVA_00867 0.71 -0.7 124,082 - BACOVA_00867 0.78 +1.9 124,175 - BACOVA_00867 0.86 +2.1 124,192 + BACOVA_00867 0.88 +1.8 124,196 + BACOVA_00867 0.88 +1.6 124,196 + BACOVA_00867 0.88 -0.6 124,197 - BACOVA_00867 0.88 -1.2 124,222 + -1.8 124,229 - -3.4 124,250 + -0.6 124,280 - +0.0 124,280 - +1.7 124,313 - +1.0 124,378 + BACOVA_00869 0.34 +0.8 124,438 - -1.5 124,491 - -0.2 124,491 - -2.8 124,491 - -0.4 124,491 - -1.0 124,508 - -1.9 124,548 + -0.1 124,549 - -2.0 124,552 - -0.4 124,588 + -2.4 124,589 - -1.8 124,595 + -0.0 124,606 + -1.4 124,654 - -2.8 124,727 - BACOVA_00868 0.13 -0.7 124,830 - BACOVA_00868 0.17 -1.2 124,964 - BACOVA_00868 0.23 -2.4 124,988 + BACOVA_00868 0.24 -1.6 124,990 + BACOVA_00868 0.24 -1.9 124,990 + BACOVA_00868 0.24 -0.5 125,093 - BACOVA_00868 0.28 -2.4 125,093 - BACOVA_00868 0.28 +2.2 125,134 + BACOVA_00868 0.30 -0.7 125,184 + BACOVA_00868 0.32 -1.3 125,210 - BACOVA_00868 0.33 -0.5 125,290 + BACOVA_00868 0.36 -0.5 125,290 + BACOVA_00868 0.36 -2.1 125,290 + BACOVA_00868 0.36 -2.7 125,291 - BACOVA_00868 0.36 -0.0 125,302 + BACOVA_00868 0.37 -4.9
Or see this region's nucleotide sequence