Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00709 and BACOVA_00710 are separated by 47 nucleotides BACOVA_00710 and BACOVA_00711 are separated by 29 nucleotides BACOVA_00711 and BACOVA_00712 are separated by 108 nucleotides
BACOVA_00709: BACOVA_00709 - hypothetical protein, at 80,992 to 82,584
_00709
BACOVA_00710: BACOVA_00710 - transcriptional regulator, AraC family, at 82,632 to 83,483
_00710
BACOVA_00711: BACOVA_00711 - hypothetical protein, at 83,513 to 83,629
_00711
BACOVA_00712: BACOVA_00712 - hypothetical protein, at 83,738 to 85,300
_00712
Position (kb)
83
84 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 82.543 kb on + strand at 82.543 kb on + strand at 82.544 kb on - strand at 82.574 kb on - strand at 82.595 kb on - strand at 82.595 kb on - strand at 82.595 kb on - strand at 82.595 kb on - strand at 82.599 kb on + strand at 82.599 kb on + strand at 82.600 kb on - strand at 82.600 kb on - strand at 82.601 kb on + strand at 82.601 kb on + strand at 82.602 kb on - strand at 82.610 kb on + strand at 82.640 kb on + strand at 82.641 kb on - strand at 82.646 kb on + strand at 82.648 kb on + strand at 82.672 kb on + strand at 82.680 kb on - strand at 82.797 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.804 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.836 kb on - strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.838 kb on + strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.839 kb on - strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.884 kb on + strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.885 kb on - strand, within BACOVA_00710 at 82.903 kb on + strand, within BACOVA_00710 at 82.917 kb on + strand, within BACOVA_00710 at 82.990 kb on + strand, within BACOVA_00710 at 83.013 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.018 kb on + strand, within BACOVA_00710 at 83.019 kb on - strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.021 kb on + strand, within BACOVA_00710 at 83.022 kb on - strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.023 kb on + strand, within BACOVA_00710 at 83.024 kb on - strand, within BACOVA_00710 at 83.026 kb on - strand, within BACOVA_00710 at 83.036 kb on + strand, within BACOVA_00710 at 83.037 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.040 kb on - strand, within BACOVA_00710 at 83.082 kb on + strand, within BACOVA_00710 at 83.095 kb on + strand, within BACOVA_00710 at 83.096 kb on - strand, within BACOVA_00710 at 83.107 kb on - strand, within BACOVA_00710 at 83.160 kb on + strand, within BACOVA_00710 at 83.161 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.190 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.200 kb on - strand, within BACOVA_00710 at 83.203 kb on + strand, within BACOVA_00710 at 83.204 kb on - strand, within BACOVA_00710 at 83.228 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.257 kb on - strand, within BACOVA_00710 at 83.267 kb on + strand, within BACOVA_00710 at 83.268 kb on - strand, within BACOVA_00710 at 83.279 kb on + strand, within BACOVA_00710 at 83.304 kb on + strand, within BACOVA_00710 at 83.355 kb on + strand, within BACOVA_00710 at 83.359 kb on - strand, within BACOVA_00710 at 83.418 kb on - strand at 83.421 kb on - strand at 83.421 kb on - strand at 83.423 kb on + strand at 83.424 kb on - strand at 83.424 kb on - strand at 83.462 kb on + strand at 83.475 kb on - strand at 83.505 kb on - strand at 83.522 kb on - strand at 83.522 kb on - strand at 83.588 kb on - strand, within BACOVA_00711 at 83.639 kb on + strand at 83.639 kb on + strand at 83.640 kb on - strand at 83.642 kb on - strand at 83.650 kb on - strand at 83.650 kb on - strand at 83.694 kb on + strand at 83.694 kb on + strand at 83.695 kb on - strand at 83.695 kb on - strand at 83.713 kb on + strand at 83.716 kb on + strand at 83.716 kb on + strand at 83.721 kb on - strand at 83.756 kb on + strand at 83.772 kb on + strand at 83.780 kb on - strand at 83.794 kb on + strand at 83.794 kb on + strand at 83.803 kb on + strand at 83.803 kb on + strand at 83.829 kb on - strand at 83.858 kb on + strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.859 kb on - strand at 83.866 kb on + strand at 83.867 kb on - strand at 83.891 kb on - strand at 83.906 kb on - strand, within BACOVA_00712 at 83.939 kb on - strand, within BACOVA_00712 at 83.950 kb on + strand, within BACOVA_00712 at 83.991 kb on + strand, within BACOVA_00712 at 84.005 kb on - strand, within BACOVA_00712 at 84.035 kb on - strand, within BACOVA_00712 at 84.036 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.094 kb on + strand, within BACOVA_00712 at 84.095 kb on - strand, within BACOVA_00712 at 84.109 kb on + strand, within BACOVA_00712 at 84.118 kb on + strand, within BACOVA_00712 at 84.136 kb on + strand, within BACOVA_00712 at 84.137 kb on - strand, within BACOVA_00712 at 84.139 kb on + strand, within BACOVA_00712 at 84.140 kb on - strand, within BACOVA_00712 at 84.142 kb on + strand, within BACOVA_00712 at 84.156 kb on + strand, within BACOVA_00712 at 84.174 kb on + strand, within BACOVA_00712 at 84.187 kb on - strand, within BACOVA_00712 at 84.193 kb on + strand, within BACOVA_00712 at 84.220 kb on + strand, within BACOVA_00712 at 84.268 kb on + strand, within BACOVA_00712 at 84.287 kb on - strand, within BACOVA_00712 at 84.309 kb on + strand, within BACOVA_00712 at 84.310 kb on - strand, within BACOVA_00712 at 84.370 kb on + strand, within BACOVA_00712 at 84.391 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.451 kb on + strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.452 kb on - strand, within BACOVA_00712 at 84.472 kb on + strand, within BACOVA_00712 at 84.473 kb on - strand, within BACOVA_00712 at 84.496 kb on + strand, within BACOVA_00712 at 84.515 kb on + strand, within BACOVA_00712 at 84.516 kb on - strand, within BACOVA_00712 at 84.584 kb on - strand, within BACOVA_00712 at 84.589 kb on + strand, within BACOVA_00712 at 84.610 kb on - strand, within BACOVA_00712
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C) remove 82,543 + +4.1 82,543 + -0.3 82,544 - +0.3 82,574 - -1.3 82,595 - +0.5 82,595 - -3.3 82,595 - +1.7 82,595 - -0.9 82,599 + +0.8 82,599 + +1.0 82,600 - -0.6 82,600 - -1.0 82,601 + -1.6 82,601 + -0.3 82,602 - +0.8 82,610 + +2.4 82,640 + -1.7 82,641 - -2.0 82,646 + +0.6 82,648 + +1.1 82,672 + -0.4 82,680 - -2.3 82,797 - BACOVA_00710 0.19 -2.6 82,804 - BACOVA_00710 0.20 -0.3 82,804 - BACOVA_00710 0.20 -1.4 82,804 - BACOVA_00710 0.20 +3.3 82,836 - BACOVA_00710 0.24 +0.3 82,836 - BACOVA_00710 0.24 -1.7 82,838 + BACOVA_00710 0.24 -1.9 82,838 + BACOVA_00710 0.24 -2.0 82,839 - BACOVA_00710 0.24 +0.5 82,839 - BACOVA_00710 0.24 +1.0 82,839 - BACOVA_00710 0.24 -0.4 82,884 + BACOVA_00710 0.30 +2.2 82,884 + BACOVA_00710 0.30 +0.4 82,885 - BACOVA_00710 0.30 -1.0 82,885 - BACOVA_00710 0.30 -1.1 82,885 - BACOVA_00710 0.30 -1.9 82,903 + BACOVA_00710 0.32 -0.9 82,917 + BACOVA_00710 0.33 -0.7 82,990 + BACOVA_00710 0.42 +2.7 83,013 + BACOVA_00710 0.45 +1.1 83,018 + BACOVA_00710 0.45 -0.4 83,018 + BACOVA_00710 0.45 +0.9 83,018 + BACOVA_00710 0.45 -2.3 83,019 - BACOVA_00710 0.45 +0.1 83,021 + BACOVA_00710 0.46 -0.8 83,021 + BACOVA_00710 0.46 +1.8 83,021 + BACOVA_00710 0.46 +0.6 83,022 - BACOVA_00710 0.46 -0.3 83,023 + BACOVA_00710 0.46 -1.9 83,023 + BACOVA_00710 0.46 +2.9 83,024 - BACOVA_00710 0.46 -3.4 83,026 - BACOVA_00710 0.46 -0.0 83,036 + BACOVA_00710 0.47 -0.8 83,037 - BACOVA_00710 0.48 +1.4 83,040 - BACOVA_00710 0.48 -2.4 83,040 - BACOVA_00710 0.48 +0.4 83,040 - BACOVA_00710 0.48 +0.3 83,082 + BACOVA_00710 0.53 -1.7 83,095 + BACOVA_00710 0.54 +1.0 83,096 - BACOVA_00710 0.54 +0.9 83,107 - BACOVA_00710 0.56 -2.0 83,160 + BACOVA_00710 0.62 -0.1 83,161 - BACOVA_00710 0.62 +1.5 83,190 - BACOVA_00710 0.65 +2.0 83,190 - BACOVA_00710 0.65 +4.2 83,200 - BACOVA_00710 0.67 +1.1 83,200 - BACOVA_00710 0.67 -1.0 83,203 + BACOVA_00710 0.67 +0.3 83,204 - BACOVA_00710 0.67 +0.0 83,228 - BACOVA_00710 0.70 -1.0 83,257 - BACOVA_00710 0.73 +3.3 83,257 - BACOVA_00710 0.73 -2.5 83,267 + BACOVA_00710 0.75 +0.3 83,268 - BACOVA_00710 0.75 +0.6 83,279 + BACOVA_00710 0.76 +0.5 83,304 + BACOVA_00710 0.79 -1.1 83,355 + BACOVA_00710 0.85 -0.8 83,359 - BACOVA_00710 0.85 +1.5 83,418 - -0.6 83,421 - -0.8 83,421 - +1.8 83,423 + -1.5 83,424 - +1.7 83,424 - -2.0 83,462 + -2.6 83,475 - -0.5 83,505 - -1.0 83,522 - -0.8 83,522 - -0.7 83,588 - BACOVA_00711 0.64 -0.6 83,639 + -0.3 83,639 + +0.2 83,640 - +0.7 83,642 - -0.1 83,650 - -1.2 83,650 - +0.7 83,694 + +1.3 83,694 + -1.1 83,695 - -0.4 83,695 - -1.3 83,713 + +2.4 83,716 + +0.3 83,716 + +1.5 83,721 - +0.4 83,756 + +1.1 83,772 + -2.1 83,780 - +0.1 83,794 + -0.1 83,794 + -2.0 83,803 + -2.7 83,803 + +0.5 83,829 - +1.1 83,858 + -0.2 83,859 - +0.4 83,859 - +0.7 83,859 - -1.0 83,866 + +1.9 83,867 - +0.8 83,891 - +0.6 83,906 - BACOVA_00712 0.11 -0.2 83,939 - BACOVA_00712 0.13 +1.1 83,950 + BACOVA_00712 0.14 -1.6 83,991 + BACOVA_00712 0.16 +1.1 84,005 - BACOVA_00712 0.17 -3.5 84,035 - BACOVA_00712 0.19 -0.2 84,036 + BACOVA_00712 0.19 +0.0 84,094 + BACOVA_00712 0.23 +0.7 84,094 + BACOVA_00712 0.23 +0.5 84,095 - BACOVA_00712 0.23 +1.3 84,109 + BACOVA_00712 0.24 -1.9 84,118 + BACOVA_00712 0.24 -1.7 84,136 + BACOVA_00712 0.25 -2.3 84,137 - BACOVA_00712 0.26 +1.1 84,139 + BACOVA_00712 0.26 -1.4 84,140 - BACOVA_00712 0.26 -1.2 84,142 + BACOVA_00712 0.26 -1.1 84,156 + BACOVA_00712 0.27 +1.2 84,174 + BACOVA_00712 0.28 +2.8 84,187 - BACOVA_00712 0.29 -0.8 84,193 + BACOVA_00712 0.29 +0.1 84,220 + BACOVA_00712 0.31 -2.0 84,268 + BACOVA_00712 0.34 -0.2 84,287 - BACOVA_00712 0.35 -2.1 84,309 + BACOVA_00712 0.37 -1.0 84,310 - BACOVA_00712 0.37 +2.7 84,370 + BACOVA_00712 0.40 -2.0 84,391 + BACOVA_00712 0.42 +1.5 84,451 + BACOVA_00712 0.46 +0.2 84,451 + BACOVA_00712 0.46 +0.6 84,452 - BACOVA_00712 0.46 +1.3 84,452 - BACOVA_00712 0.46 -1.3 84,472 + BACOVA_00712 0.47 -3.0 84,473 - BACOVA_00712 0.47 +1.2 84,496 + BACOVA_00712 0.48 +0.2 84,515 + BACOVA_00712 0.50 -1.4 84,516 - BACOVA_00712 0.50 -0.6 84,584 - BACOVA_00712 0.54 -1.3 84,589 + BACOVA_00712 0.54 -0.1 84,610 - BACOVA_00712 0.56 +0.1
Or see this region's nucleotide sequence