Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00616

Experiment: Hyaluronic from Streptococcus equi 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00615 and BACOVA_00616 are separated by 134 nucleotidesBACOVA_00616 and BACOVA_00617 are separated by 77 nucleotidesBACOVA_00617 and BACOVA_00618 are separated by 90 nucleotides BACOVA_00615: BACOVA_00615 - Sigma-70 region 2, at 53,520 to 54,380 _00615 BACOVA_00616: BACOVA_00616 - hypothetical protein, at 54,515 to 55,138 _00616 BACOVA_00617: BACOVA_00617 - hypothetical protein, at 55,216 to 55,617 _00617 BACOVA_00618: BACOVA_00618 - clostripain family, at 55,708 to 56,898 _00618 Position (kb) 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 54.378 kb on + strandat 54.382 kb on + strandat 54.382 kb on + strandat 54.389 kb on + strandat 54.443 kb on + strandat 54.453 kb on + strandat 54.470 kb on - strandat 54.486 kb on - strandat 54.487 kb on + strandat 54.500 kb on + strandat 54.504 kb on - strandat 54.621 kb on + strand, within BACOVA_00616at 54.662 kb on + strand, within BACOVA_00616at 54.663 kb on - strand, within BACOVA_00616at 54.663 kb on - strand, within BACOVA_00616at 54.671 kb on - strand, within BACOVA_00616at 54.683 kb on - strand, within BACOVA_00616at 54.686 kb on - strand, within BACOVA_00616at 54.693 kb on - strand, within BACOVA_00616at 54.706 kb on - strand, within BACOVA_00616at 54.773 kb on + strand, within BACOVA_00616at 54.773 kb on + strand, within BACOVA_00616at 54.774 kb on - strand, within BACOVA_00616at 54.809 kb on - strand, within BACOVA_00616at 54.847 kb on + strand, within BACOVA_00616at 54.848 kb on - strand, within BACOVA_00616at 54.851 kb on + strand, within BACOVA_00616at 54.851 kb on + strand, within BACOVA_00616at 54.852 kb on - strand, within BACOVA_00616at 54.872 kb on + strand, within BACOVA_00616at 54.872 kb on + strand, within BACOVA_00616at 54.894 kb on - strand, within BACOVA_00616at 54.920 kb on + strand, within BACOVA_00616at 54.927 kb on + strand, within BACOVA_00616at 54.953 kb on - strand, within BACOVA_00616at 54.969 kb on - strand, within BACOVA_00616at 54.970 kb on + strand, within BACOVA_00616at 54.971 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.014 kb on - strand, within BACOVA_00616at 55.056 kb on + strand, within BACOVA_00616at 55.130 kb on + strandat 55.131 kb on - strandat 55.150 kb on + strandat 55.150 kb on + strandat 55.163 kb on + strandat 55.164 kb on - strandat 55.164 kb on - strandat 55.169 kb on + strandat 55.170 kb on - strandat 55.208 kb on + strandat 55.209 kb on - strandat 55.209 kb on - strandat 55.211 kb on - strandat 55.215 kb on + strandat 55.215 kb on + strandat 55.306 kb on + strand, within BACOVA_00617at 55.339 kb on - strand, within BACOVA_00617at 55.343 kb on + strand, within BACOVA_00617at 55.343 kb on + strand, within BACOVA_00617at 55.344 kb on - strand, within BACOVA_00617at 55.344 kb on - strand, within BACOVA_00617at 55.368 kb on - strand, within BACOVA_00617at 55.370 kb on + strand, within BACOVA_00617at 55.370 kb on + strand, within BACOVA_00617at 55.371 kb on - strand, within BACOVA_00617at 55.420 kb on + strand, within BACOVA_00617at 55.421 kb on - strand, within BACOVA_00617at 55.422 kb on + strand, within BACOVA_00617at 55.423 kb on - strand, within BACOVA_00617at 55.426 kb on + strand, within BACOVA_00617at 55.470 kb on + strand, within BACOVA_00617at 55.473 kb on + strand, within BACOVA_00617at 55.473 kb on + strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.474 kb on - strand, within BACOVA_00617at 55.480 kb on - strand, within BACOVA_00617at 55.487 kb on - strand, within BACOVA_00617at 55.544 kb on - strand, within BACOVA_00617at 55.555 kb on - strand, within BACOVA_00617at 55.618 kb on + strandat 55.629 kb on + strandat 55.629 kb on + strandat 55.642 kb on + strandat 55.677 kb on + strandat 55.690 kb on + strandat 55.724 kb on + strandat 55.750 kb on - strandat 55.803 kb on + strandat 55.803 kb on + strandat 55.804 kb on - strandat 55.804 kb on - strandat 55.816 kb on + strandat 55.816 kb on + strandat 55.900 kb on - strand, within BACOVA_00618at 55.906 kb on + strand, within BACOVA_00618at 55.907 kb on - strand, within BACOVA_00618at 55.921 kb on + strand, within BACOVA_00618at 55.994 kb on + strand, within BACOVA_00618at 56.005 kb on + strand, within BACOVA_00618at 56.006 kb on - strand, within BACOVA_00618at 56.024 kb on + strand, within BACOVA_00618at 56.087 kb on - strand, within BACOVA_00618

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Per-strain Table

Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi 2.5 mg/mL (C)
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54,378 + -1.9
54,382 + -0.2
54,382 + -0.7
54,389 + -0.1
54,443 + +1.4
54,453 + -1.5
54,470 - +1.7
54,486 - -0.8
54,487 + +0.2
54,500 + -0.4
54,504 - -0.9
54,621 + BACOVA_00616 0.17 -1.1
54,662 + BACOVA_00616 0.24 +0.9
54,663 - BACOVA_00616 0.24 +0.5
54,663 - BACOVA_00616 0.24 -0.8
54,671 - BACOVA_00616 0.25 +1.9
54,683 - BACOVA_00616 0.27 -0.0
54,686 - BACOVA_00616 0.27 -0.2
54,693 - BACOVA_00616 0.29 -0.4
54,706 - BACOVA_00616 0.31 +1.4
54,773 + BACOVA_00616 0.41 +1.3
54,773 + BACOVA_00616 0.41 +1.2
54,774 - BACOVA_00616 0.42 -1.1
54,809 - BACOVA_00616 0.47 +0.2
54,847 + BACOVA_00616 0.53 +1.2
54,848 - BACOVA_00616 0.53 -2.0
54,851 + BACOVA_00616 0.54 -2.2
54,851 + BACOVA_00616 0.54 +0.0
54,852 - BACOVA_00616 0.54 -0.4
54,872 + BACOVA_00616 0.57 -0.2
54,872 + BACOVA_00616 0.57 -0.0
54,894 - BACOVA_00616 0.61 -0.2
54,920 + BACOVA_00616 0.65 +3.6
54,927 + BACOVA_00616 0.66 +1.2
54,953 - BACOVA_00616 0.70 -0.6
54,969 - BACOVA_00616 0.73 -0.9
54,970 + BACOVA_00616 0.73 -0.3
54,971 - BACOVA_00616 0.73 +0.8
55,014 - BACOVA_00616 0.80 +2.8
55,014 - BACOVA_00616 0.80 -1.1
55,014 - BACOVA_00616 0.80 -3.5
55,056 + BACOVA_00616 0.87 +0.5
55,130 + +0.5
55,131 - -0.8
55,150 + -0.5
55,150 + -0.0
55,163 + -0.5
55,164 - -0.7
55,164 - -0.2
55,169 + -1.8
55,170 - -0.4
55,208 + +2.4
55,209 - +0.6
55,209 - +0.7
55,211 - +1.0
55,215 + +1.2
55,215 + -1.5
55,306 + BACOVA_00617 0.22 -0.1
55,339 - BACOVA_00617 0.31 -0.3
55,343 + BACOVA_00617 0.32 -0.9
55,343 + BACOVA_00617 0.32 -0.9
55,344 - BACOVA_00617 0.32 +1.0
55,344 - BACOVA_00617 0.32 -1.6
55,368 - BACOVA_00617 0.38 +3.6
55,370 + BACOVA_00617 0.38 +0.5
55,370 + BACOVA_00617 0.38 +1.5
55,371 - BACOVA_00617 0.39 -0.0
55,420 + BACOVA_00617 0.51 -0.5
55,421 - BACOVA_00617 0.51 +1.3
55,422 + BACOVA_00617 0.51 -1.1
55,423 - BACOVA_00617 0.51 +0.1
55,426 + BACOVA_00617 0.52 -1.7
55,470 + BACOVA_00617 0.63 -0.0
55,473 + BACOVA_00617 0.64 +1.5
55,473 + BACOVA_00617 0.64 -1.4
55,474 - BACOVA_00617 0.64 +2.0
55,474 - BACOVA_00617 0.64 -0.3
55,474 - BACOVA_00617 0.64 -2.2
55,480 - BACOVA_00617 0.66 -0.9
55,487 - BACOVA_00617 0.67 +0.0
55,544 - BACOVA_00617 0.82 -1.2
55,555 - BACOVA_00617 0.84 -0.8
55,618 + +0.9
55,629 + +0.3
55,629 + -0.4
55,642 + +0.8
55,677 + -0.2
55,690 + -0.5
55,724 + -1.7
55,750 - +1.1
55,803 + -1.2
55,803 + +0.7
55,804 - +0.6
55,804 - +3.6
55,816 + +3.0
55,816 + -1.5
55,900 - BACOVA_00618 0.16 -0.5
55,906 + BACOVA_00618 0.17 +1.8
55,907 - BACOVA_00618 0.17 +0.2
55,921 + BACOVA_00618 0.18 +2.1
55,994 + BACOVA_00618 0.24 +0.9
56,005 + BACOVA_00618 0.25 +1.9
56,006 - BACOVA_00618 0.25 -1.0
56,024 + BACOVA_00618 0.27 +0.1
56,087 - BACOVA_00618 0.32 -0.7

Or see this region's nucleotide sequence