Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF998 and GFF999 are separated by 5 nucleotides GFF999 and GFF1000 are separated by 16 nucleotides
GFF998 - putative thiolase, at 736,791 to 737,960
GFF998
GFF999 - hypothetical protein, at 737,966 to 738,367
GFF999
GFF1000 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 738,384 to 739,616
GFF1000
Position (kb) 737
738
739 Strain fitness (log2 ratio) -1
0
1 at 737.021 kb on + strand, within GFF998 at 737.021 kb on + strand, within GFF998 at 737.133 kb on + strand, within GFF998 at 737.274 kb on + strand, within GFF998 at 737.423 kb on + strand, within GFF998 at 737.652 kb on + strand, within GFF998 at 737.761 kb on + strand, within GFF998 at 737.762 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.815 kb on - strand, within GFF998 at 737.964 kb on - strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.969 kb on + strand at 737.970 kb on - strand at 737.970 kb on - strand at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.156 kb on - strand, within GFF999 at 738.161 kb on + strand, within GFF999 at 738.162 kb on - strand, within GFF999 at 738.212 kb on + strand, within GFF999 at 738.366 kb on - strand at 738.525 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.588 kb on + strand, within GFF1000 at 738.589 kb on - strand, within GFF1000 at 738.937 kb on - strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.338 kb on + strand, within GFF1000 at 739.339 kb on - strand, within GFF1000 at 739.339 kb on - strand, within GFF1000
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 737,021 + GFF998 0.20 -0.9 737,021 + GFF998 0.20 -0.4 737,133 + GFF998 0.29 +1.6 737,274 + GFF998 0.41 +0.2 737,423 + GFF998 0.54 -0.1 737,652 + GFF998 0.74 -0.1 737,761 + GFF998 0.83 -0.6 737,762 - GFF998 0.83 +0.2 737,815 - GFF998 0.88 -0.8 737,815 - GFF998 0.88 -0.4 737,964 - -0.7 737,969 + -0.4 737,969 + +0.0 737,969 + -0.8 737,970 - -0.4 737,970 - +0.9 738,156 - GFF999 0.47 -0.7 738,156 - GFF999 0.47 -1.4 738,156 - GFF999 0.47 +0.1 738,161 + GFF999 0.49 -0.0 738,162 - GFF999 0.49 +0.6 738,212 + GFF999 0.61 +0.2 738,366 - +0.5 738,525 + GFF1000 0.11 +0.8 738,588 + GFF1000 0.17 +0.9 738,588 + GFF1000 0.17 -0.4 738,589 - GFF1000 0.17 -0.1 738,937 - GFF1000 0.45 +0.7 739,338 + GFF1000 0.77 +0.6 739,338 + GFF1000 0.77 +0.0 739,338 + GFF1000 0.77 +0.1 739,338 + GFF1000 0.77 +0.1 739,339 - GFF1000 0.77 +0.6 739,339 - GFF1000 0.77 +0.1
Or see this region's nucleotide sequence