Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF939 and GFF940 overlap by 7 nucleotides GFF940 and GFF941 are separated by 47 nucleotides GFF941 and GFF942 are separated by 510 nucleotides
GFF939 - hypothetical protein, at 672,100 to 673,329
GFF939
GFF940 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 673,323 to 674,183
GFF940
GFF941 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 674,231 to 675,331
GFF941
GFF942 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 675,842 to 676,720
GFF942
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1 at 673.320 kb on + strand at 673.320 kb on + strand at 673.321 kb on - strand at 673.402 kb on + strand at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.422 kb on + strand, within GFF940 at 673.423 kb on - strand, within GFF940 at 673.423 kb on - strand, within GFF940 at 673.511 kb on + strand, within GFF940 at 673.511 kb on + strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.512 kb on - strand, within GFF940 at 673.761 kb on + strand, within GFF940 at 673.762 kb on - strand, within GFF940 at 674.017 kb on - strand, within GFF940 at 674.022 kb on + strand, within GFF940 at 674.023 kb on - strand, within GFF940 at 674.023 kb on - strand, within GFF940 at 674.100 kb on + strand at 674.146 kb on + strand at 674.155 kb on - strand at 674.155 kb on - strand at 674.205 kb on + strand at 674.648 kb on + strand, within GFF941 at 674.648 kb on + strand, within GFF941 at 674.648 kb on + strand, within GFF941 at 674.649 kb on - strand, within GFF941 at 674.649 kb on - strand, within GFF941 at 674.930 kb on + strand, within GFF941 at 674.930 kb on + strand, within GFF941 at 674.930 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.939 kb on + strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.940 kb on - strand, within GFF941 at 674.993 kb on + strand, within GFF941 at 674.994 kb on - strand, within GFF941 at 674.994 kb on - strand, within GFF941 at 675.015 kb on + strand, within GFF941 at 675.015 kb on + strand, within GFF941 at 675.329 kb on + strand at 675.524 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.748 kb on + strand at 676.027 kb on - strand, within GFF942 at 676.054 kb on - strand, within GFF942 at 676.054 kb on - strand, within GFF942 at 676.282 kb on - strand, within GFF942
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 673,320 + +0.3 673,320 + -0.4 673,321 - +0.4 673,402 + +0.1 673,422 + GFF940 0.11 +0.4 673,422 + GFF940 0.11 +0.2 673,422 + GFF940 0.11 +0.4 673,422 + GFF940 0.11 +0.4 673,423 - GFF940 0.12 +1.0 673,423 - GFF940 0.12 +1.6 673,511 + GFF940 0.22 -0.2 673,511 + GFF940 0.22 -1.6 673,512 - GFF940 0.22 +0.1 673,512 - GFF940 0.22 +0.4 673,512 - GFF940 0.22 -0.2 673,512 - GFF940 0.22 -0.2 673,512 - GFF940 0.22 -0.1 673,761 + GFF940 0.51 -0.3 673,762 - GFF940 0.51 -0.2 674,017 - GFF940 0.81 +0.9 674,022 + GFF940 0.81 -0.5 674,023 - GFF940 0.81 +0.6 674,023 - GFF940 0.81 +0.0 674,100 + -0.2 674,146 + +1.5 674,155 - +1.0 674,155 - -0.1 674,205 + +0.9 674,648 + GFF941 0.38 +1.0 674,648 + GFF941 0.38 +0.1 674,648 + GFF941 0.38 +0.0 674,649 - GFF941 0.38 +1.0 674,649 - GFF941 0.38 +0.3 674,930 + GFF941 0.63 +0.1 674,930 + GFF941 0.63 +1.1 674,930 + GFF941 0.63 +1.1 674,939 + GFF941 0.64 -1.6 674,939 + GFF941 0.64 -0.0 674,939 + GFF941 0.64 +1.6 674,939 + GFF941 0.64 -0.2 674,939 + GFF941 0.64 +0.1 674,939 + GFF941 0.64 +0.8 674,939 + GFF941 0.64 +0.2 674,940 - GFF941 0.64 +0.8 674,940 - GFF941 0.64 -2.1 674,940 - GFF941 0.64 +1.1 674,993 + GFF941 0.69 -0.2 674,994 - GFF941 0.69 -0.2 674,994 - GFF941 0.69 +0.5 675,015 + GFF941 0.71 +0.4 675,015 + GFF941 0.71 -0.2 675,329 + +0.6 675,524 + +0.2 675,533 + -0.3 675,534 - +0.2 675,748 + +0.3 676,027 - GFF942 0.21 -2.2 676,054 - GFF942 0.24 +0.1 676,054 - GFF942 0.24 +1.2 676,282 - GFF942 0.50 -0.1
Or see this region's nucleotide sequence