Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF932 and GFF933 are separated by 9 nucleotides GFF933 and GFF934 are separated by 31 nucleotides
GFF932 - Thiolase, at 664,121 to 665,368
GFF932
GFF933 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 665,378 to 666,145
GFF933
GFF934 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 666,177 to 667,337
GFF934
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1 at 664.428 kb on - strand, within GFF932 at 664.428 kb on - strand, within GFF932 at 664.620 kb on - strand, within GFF932 at 664.640 kb on + strand, within GFF932 at 664.640 kb on + strand, within GFF932 at 664.641 kb on - strand, within GFF932 at 664.751 kb on + strand, within GFF932 at 664.763 kb on + strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 665.506 kb on - strand, within GFF933 at 665.506 kb on - strand, within GFF933 at 665.935 kb on - strand, within GFF933 at 665.988 kb on - strand, within GFF933 at 666.089 kb on + strand at 666.090 kb on - strand at 666.090 kb on - strand at 666.091 kb on + strand at 666.091 kb on + strand at 666.092 kb on - strand at 666.092 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.396 kb on + strand, within GFF934 at 666.396 kb on + strand, within GFF934 at 666.397 kb on - strand, within GFF934 at 666.397 kb on - strand, within GFF934 at 666.409 kb on - strand, within GFF934 at 666.409 kb on - strand, within GFF934 at 666.630 kb on + strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.631 kb on - strand, within GFF934 at 666.673 kb on - strand, within GFF934 at 666.673 kb on - strand, within GFF934 at 666.701 kb on + strand, within GFF934 at 666.860 kb on - strand, within GFF934 at 666.915 kb on - strand, within GFF934 at 666.915 kb on - strand, within GFF934
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 664,428 - GFF932 0.25 +0.3 664,428 - GFF932 0.25 -0.7 664,620 - GFF932 0.40 +0.1 664,640 + GFF932 0.42 -0.3 664,640 + GFF932 0.42 -0.3 664,641 - GFF932 0.42 +0.5 664,751 + GFF932 0.50 +0.6 664,763 + GFF932 0.51 -0.7 664,764 - GFF932 0.52 +0.6 664,764 - GFF932 0.52 +0.2 664,764 - GFF932 0.52 +0.8 664,764 - GFF932 0.52 +0.9 664,764 - GFF932 0.52 +0.2 665,506 - GFF933 0.17 +0.0 665,506 - GFF933 0.17 +1.3 665,935 - GFF933 0.73 +0.3 665,988 - GFF933 0.79 +0.4 666,089 + +0.0 666,090 - -0.4 666,090 - +0.3 666,091 + -0.1 666,091 + +0.2 666,092 - +0.0 666,092 - +0.3 666,284 - +1.5 666,284 - -0.6 666,284 - -0.1 666,284 - -0.1 666,284 - +0.1 666,396 + GFF934 0.19 +0.3 666,396 + GFF934 0.19 +0.7 666,397 - GFF934 0.19 +0.6 666,397 - GFF934 0.19 -1.9 666,409 - GFF934 0.20 -0.0 666,409 - GFF934 0.20 +0.6 666,630 + GFF934 0.39 +0.2 666,631 - GFF934 0.39 +0.5 666,631 - GFF934 0.39 +0.5 666,631 - GFF934 0.39 +0.5 666,673 - GFF934 0.43 +0.8 666,673 - GFF934 0.43 -1.4 666,701 + GFF934 0.45 +0.7 666,860 - GFF934 0.59 +0.1 666,915 - GFF934 0.64 -0.0 666,915 - GFF934 0.64 +0.1
Or see this region's nucleotide sequence