Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
GFF835 - Rod shape determination protein, at 534,327 to 535,079
GFF835
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 533.421 kb on - strand at 533.513 kb on + strand at 533.513 kb on + strand at 533.701 kb on + strand at 533.731 kb on + strand at 533.731 kb on + strand at 533.731 kb on + strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.732 kb on - strand at 533.844 kb on + strand at 533.845 kb on - strand at 533.915 kb on + strand at 533.916 kb on - strand at 533.944 kb on - strand at 533.965 kb on + strand at 534.125 kb on + strand at 534.125 kb on + strand at 534.126 kb on - strand at 534.146 kb on + strand at 534.146 kb on + strand at 534.179 kb on + strand at 534.179 kb on + strand at 534.180 kb on - strand at 534.180 kb on - strand at 534.180 kb on - strand at 534.180 kb on - strand at 534.180 kb on - strand at 534.223 kb on - strand at 534.223 kb on - strand at 534.369 kb on + strand at 534.369 kb on + strand at 534.541 kb on + strand, within GFF835 at 534.577 kb on + strand, within GFF835 at 534.577 kb on + strand, within GFF835 at 534.577 kb on + strand, within GFF835 at 534.664 kb on + strand, within GFF835 at 534.664 kb on + strand, within GFF835 at 534.665 kb on - strand, within GFF835 at 534.751 kb on + strand, within GFF835 at 534.751 kb on + strand, within GFF835 at 534.751 kb on + strand, within GFF835 at 534.752 kb on - strand, within GFF835 at 534.770 kb on - strand, within GFF835 at 534.856 kb on + strand, within GFF835 at 534.857 kb on - strand, within GFF835 at 534.859 kb on + strand, within GFF835 at 534.859 kb on + strand, within GFF835 at 534.862 kb on + strand, within GFF835 at 534.862 kb on + strand, within GFF835 at 534.910 kb on - strand, within GFF835 at 534.910 kb on - strand, within GFF835 at 534.910 kb on - strand, within GFF835 at 534.933 kb on - strand, within GFF835 at 534.933 kb on - strand, within GFF835 at 535.072 kb on + strand at 535.072 kb on + strand at 535.072 kb on + strand at 535.072 kb on + strand at 535.073 kb on - strand at 535.073 kb on - strand at 535.073 kb on - strand at 535.079 kb on + strand at 535.079 kb on + strand at 535.079 kb on + strand at 535.121 kb on - strand at 535.349 kb on + strand at 535.412 kb on + strand at 535.412 kb on + strand at 535.413 kb on - strand at 535.413 kb on - strand at 535.413 kb on - strand at 535.413 kb on - strand at 535.413 kb on - strand at 535.583 kb on + strand at 535.583 kb on + strand at 535.583 kb on + strand at 535.650 kb on + strand at 535.650 kb on + strand at 535.650 kb on + strand at 535.666 kb on - strand at 535.858 kb on + strand at 535.859 kb on - strand at 535.859 kb on - strand at 535.859 kb on - strand at 535.863 kb on - strand at 535.871 kb on - strand at 535.871 kb on - strand at 535.949 kb on - strand at 535.949 kb on - strand at 536.013 kb on + strand at 536.013 kb on + strand at 536.013 kb on + strand at 536.014 kb on - strand at 536.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 533,421 - -0.1 533,513 + -0.0 533,513 + +0.4 533,701 + +0.4 533,731 + -0.1 533,731 + -0.4 533,731 + +1.5 533,732 - +0.2 533,732 - -2.1 533,732 - +0.2 533,732 - +0.4 533,732 - +0.6 533,732 - +0.4 533,732 - -0.3 533,732 - -1.4 533,844 + +0.6 533,845 - -0.1 533,915 + +0.0 533,916 - -0.0 533,944 - +0.2 533,965 + +0.2 534,125 + -0.2 534,125 + +0.9 534,126 - -0.9 534,146 + -1.4 534,146 + -0.6 534,179 + +0.1 534,179 + -0.7 534,180 - +1.0 534,180 - -0.4 534,180 - +0.4 534,180 - +0.6 534,180 - -0.2 534,223 - +0.4 534,223 - -1.3 534,369 + -1.2 534,369 + +0.6 534,541 + GFF835 0.28 -1.0 534,577 + GFF835 0.33 +0.9 534,577 + GFF835 0.33 +0.8 534,577 + GFF835 0.33 +0.5 534,664 + GFF835 0.45 +0.6 534,664 + GFF835 0.45 +0.2 534,665 - GFF835 0.45 +0.1 534,751 + GFF835 0.56 +0.4 534,751 + GFF835 0.56 -0.1 534,751 + GFF835 0.56 +0.6 534,752 - GFF835 0.56 +0.1 534,770 - GFF835 0.59 -0.1 534,856 + GFF835 0.70 -0.4 534,857 - GFF835 0.70 -0.5 534,859 + GFF835 0.71 +0.1 534,859 + GFF835 0.71 +1.0 534,862 + GFF835 0.71 +1.1 534,862 + GFF835 0.71 -1.9 534,910 - GFF835 0.77 +0.4 534,910 - GFF835 0.77 -0.3 534,910 - GFF835 0.77 -0.4 534,933 - GFF835 0.80 -0.0 534,933 - GFF835 0.80 +0.3 535,072 + +0.2 535,072 + -1.4 535,072 + -0.4 535,072 + +0.0 535,073 - +1.6 535,073 - -1.9 535,073 - -0.0 535,079 + +0.4 535,079 + +0.9 535,079 + +0.0 535,121 - +0.2 535,349 + -0.2 535,412 + +0.4 535,412 + +1.2 535,413 - +0.6 535,413 - -0.1 535,413 - +0.0 535,413 - +0.6 535,413 - -0.4 535,583 + -1.4 535,583 + +0.0 535,583 + -0.4 535,650 + +0.1 535,650 + -0.0 535,650 + -0.9 535,666 - +1.0 535,858 + +0.5 535,859 - +0.2 535,859 - +0.1 535,859 - +0.2 535,863 - -0.4 535,871 - +0.2 535,871 - -0.7 535,949 - +0.0 535,949 - +0.4 536,013 + -0.4 536,013 + -0.6 536,013 + +0.5 536,014 - +0.4 536,014 - +0.4
Or see this region's nucleotide sequence