Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF749 and GFF750 are separated by 530 nucleotides GFF750 and GFF751 are separated by 494 nucleotides
GFF749 - Tricarboxylate transport membrane protein TctA, at 435,154 to 436,716
GFF749
GFF750 - hypothetical protein, at 437,247 to 438,044
GFF750
GFF751 - Rhs family protein, at 438,539 to 441,220
GFF751
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1 at 436.806 kb on + strand at 436.807 kb on - strand at 436.807 kb on - strand at 436.957 kb on + strand at 436.957 kb on + strand at 436.958 kb on - strand at 436.958 kb on - strand at 436.958 kb on - strand at 436.983 kb on - strand at 437.075 kb on + strand at 437.076 kb on - strand at 437.076 kb on - strand at 437.076 kb on - strand at 437.078 kb on - strand at 437.102 kb on + strand at 437.111 kb on + strand at 437.112 kb on - strand at 437.126 kb on - strand at 437.126 kb on - strand at 437.171 kb on + strand at 437.171 kb on + strand at 437.219 kb on + strand at 437.220 kb on - strand at 437.279 kb on + strand at 437.279 kb on + strand at 437.279 kb on + strand at 437.280 kb on - strand at 437.325 kb on - strand at 437.343 kb on + strand, within GFF750 at 437.344 kb on - strand, within GFF750 at 437.429 kb on + strand, within GFF750 at 437.429 kb on + strand, within GFF750 at 437.430 kb on - strand, within GFF750 at 437.472 kb on + strand, within GFF750 at 437.472 kb on + strand, within GFF750 at 437.598 kb on + strand, within GFF750 at 437.598 kb on + strand, within GFF750 at 437.599 kb on - strand, within GFF750 at 437.599 kb on - strand, within GFF750 at 438.007 kb on + strand at 438.046 kb on + strand at 438.128 kb on - strand at 438.186 kb on - strand at 438.292 kb on + strand at 438.338 kb on - strand at 438.525 kb on - strand at 438.536 kb on - strand at 438.644 kb on + strand at 438.718 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.768 kb on - strand at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.894 kb on - strand, within GFF751 at 438.894 kb on - strand, within GFF751 at 438.894 kb on - strand, within GFF751
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 436,806 + +0.0 436,807 - +0.2 436,807 - +0.6 436,957 + -0.7 436,957 + -0.1 436,958 - +0.0 436,958 - +0.0 436,958 - +1.1 436,983 - -0.1 437,075 + +0.3 437,076 - +0.6 437,076 - +0.1 437,076 - -0.3 437,078 - -0.2 437,102 + +0.1 437,111 + -0.7 437,112 - +1.0 437,126 - -0.0 437,126 - +0.8 437,171 + +1.3 437,171 + +0.9 437,219 + -0.4 437,220 - -0.1 437,279 + -0.5 437,279 + +0.6 437,279 + -0.2 437,280 - -0.3 437,325 - -0.4 437,343 + GFF750 0.12 -0.3 437,344 - GFF750 0.12 -0.1 437,429 + GFF750 0.23 -1.4 437,429 + GFF750 0.23 -2.6 437,430 - GFF750 0.23 -0.2 437,472 + GFF750 0.28 +0.1 437,472 + GFF750 0.28 -0.8 437,598 + GFF750 0.44 -0.4 437,598 + GFF750 0.44 -1.8 437,599 - GFF750 0.44 +0.6 437,599 - GFF750 0.44 -1.0 438,007 + -0.1 438,046 + +0.4 438,128 - +0.1 438,186 - +0.4 438,292 + -0.5 438,338 - -0.8 438,525 - +0.6 438,536 - +0.2 438,644 + -0.3 438,718 + -0.1 438,730 + +0.2 438,730 + -0.1 438,730 + -0.1 438,730 + +0.1 438,730 + +1.1 438,730 + -0.1 438,737 + +0.4 438,737 + -0.4 438,737 + -0.3 438,737 + -0.9 438,738 - -0.6 438,738 - +0.8 438,738 - -0.0 438,738 - -0.2 438,768 - +0.6 438,849 + GFF751 0.12 -0.0 438,849 + GFF751 0.12 -0.4 438,849 + GFF751 0.12 -0.7 438,849 + GFF751 0.12 +0.2 438,894 - GFF751 0.13 +0.0 438,894 - GFF751 0.13 +0.5 438,894 - GFF751 0.13 +0.6
Or see this region's nucleotide sequence