Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF729 and GFF730 are separated by 162 nucleotides GFF730 and GFF731 are separated by 9 nucleotides GFF731 and GFF732 are separated by 36 nucleotides
GFF729 - L-lactate dehydrogenase (EC 1.1.2.3), at 408,351 to 409,502
GFF729
GFF730 - hypothetical protein, at 409,665 to 409,976
GFF730
GFF731 - putative exported protein, at 409,986 to 410,972
GFF731
GFF732 - Muconate cycloisomerase (EC 5.5.1.1), at 411,009 to 412,163
GFF732
Position (kb) 409
410
411 Strain fitness (log2 ratio) -1
0
1 at 409.114 kb on + strand, within GFF729 at 409.115 kb on - strand, within GFF729 at 409.430 kb on - strand at 409.433 kb on + strand at 409.435 kb on + strand at 409.436 kb on - strand at 409.767 kb on + strand, within GFF730 at 409.767 kb on + strand, within GFF730 at 409.767 kb on + strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.768 kb on - strand, within GFF730 at 409.932 kb on + strand, within GFF730 at 409.933 kb on - strand, within GFF730 at 410.077 kb on + strand at 410.078 kb on - strand at 410.078 kb on - strand at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.200 kb on + strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.201 kb on - strand, within GFF731 at 410.491 kb on + strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.492 kb on - strand, within GFF731 at 410.498 kb on - strand, within GFF731 at 410.790 kb on + strand, within GFF731 at 410.791 kb on - strand, within GFF731 at 411.178 kb on + strand, within GFF732 at 411.530 kb on - strand, within GFF732 at 411.556 kb on + strand, within GFF732 at 411.556 kb on + strand, within GFF732 at 411.557 kb on - strand, within GFF732 at 411.770 kb on - strand, within GFF732
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 409,114 + GFF729 0.66 +0.4 409,115 - GFF729 0.66 +0.2 409,430 - -0.8 409,433 + +0.3 409,435 + +0.0 409,436 - +0.3 409,767 + GFF730 0.33 -0.8 409,767 + GFF730 0.33 +0.5 409,767 + GFF730 0.33 +0.5 409,768 - GFF730 0.33 +0.9 409,768 - GFF730 0.33 -0.0 409,768 - GFF730 0.33 -0.1 409,932 + GFF730 0.86 -0.1 409,933 - GFF730 0.86 +0.3 410,077 + +0.1 410,078 - +1.4 410,078 - -1.2 410,200 + GFF731 0.22 +1.2 410,200 + GFF731 0.22 -0.1 410,200 + GFF731 0.22 -0.5 410,201 - GFF731 0.22 +0.5 410,201 - GFF731 0.22 +1.1 410,491 + GFF731 0.51 +0.8 410,492 - GFF731 0.51 +0.1 410,492 - GFF731 0.51 +0.0 410,498 - GFF731 0.52 +0.2 410,790 + GFF731 0.81 -0.1 410,791 - GFF731 0.82 +0.3 411,178 + GFF732 0.15 +0.4 411,530 - GFF732 0.45 +1.6 411,556 + GFF732 0.47 -0.2 411,556 + GFF732 0.47 -0.3 411,557 - GFF732 0.47 +0.1 411,770 - GFF732 0.66 +0.2
Or see this region's nucleotide sequence