Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF672 and GFF673 are separated by 18 nucleotides GFF673 and GFF674 are separated by 10 nucleotides GFF674 and GFF675 are separated by 7 nucleotides GFF675 and GFF676 are separated by 118 nucleotides GFF676 and GFF677 are separated by 51 nucleotides
GFF672 - carbon monoxide dehydrogenase E protein, at 358,061 to 359,248
GFF672
GFF673 - GCN5-related N-acetyltransferase, at 359,267 to 359,860
GFF673
GFF674 - hypothetical protein, at 359,871 to 360,107
GFF674
GFF675 - ATPase associated with various cellular activities, AAA_5, at 360,115 to 360,957
GFF675
GFF676 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 361,076 to 361,732
GFF676
GFF677 - FIG00433688: hypothetical protein, at 361,784 to 362,218
GFF677
Position (kb) 360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 359.188 kb on - strand at 359.229 kb on + strand at 359.229 kb on + strand at 359.229 kb on + strand at 359.289 kb on + strand at 359.289 kb on + strand at 359.289 kb on + strand at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.337 kb on + strand, within GFF673 at 359.338 kb on - strand, within GFF673 at 359.338 kb on - strand, within GFF673 at 359.445 kb on + strand, within GFF673 at 359.445 kb on + strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.446 kb on - strand, within GFF673 at 359.556 kb on + strand, within GFF673 at 359.565 kb on + strand, within GFF673 at 359.566 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.608 kb on - strand, within GFF673 at 359.703 kb on + strand, within GFF673 at 360.332 kb on + strand, within GFF675 at 360.332 kb on + strand, within GFF675 at 360.333 kb on - strand, within GFF675 at 360.333 kb on - strand, within GFF675 at 360.431 kb on + strand, within GFF675 at 360.431 kb on + strand, within GFF675 at 360.432 kb on - strand, within GFF675 at 360.432 kb on - strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.539 kb on + strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.540 kb on - strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.545 kb on + strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.546 kb on - strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.677 kb on + strand, within GFF675 at 360.678 kb on - strand, within GFF675 at 360.743 kb on + strand, within GFF675 at 360.749 kb on + strand, within GFF675 at 360.749 kb on + strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.750 kb on - strand, within GFF675 at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.932 kb on + strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 360.933 kb on - strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.014 kb on + strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.015 kb on - strand at 361.016 kb on + strand at 361.016 kb on + strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.017 kb on - strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.018 kb on + strand at 361.019 kb on - strand at 361.019 kb on - strand at 361.280 kb on + strand, within GFF676 at 361.280 kb on + strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.281 kb on - strand, within GFF676 at 361.305 kb on - strand, within GFF676 at 361.343 kb on - strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.391 kb on + strand, within GFF676 at 361.392 kb on - strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.523 kb on + strand, within GFF676 at 361.524 kb on - strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.577 kb on + strand, within GFF676 at 361.578 kb on - strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.643 kb on + strand, within GFF676 at 361.644 kb on - strand, within GFF676 at 361.676 kb on + strand at 361.676 kb on + strand at 361.676 kb on + strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.677 kb on - strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.821 kb on + strand at 361.822 kb on - strand at 361.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 359,188 - +0.1 359,229 + +0.8 359,229 + -1.1 359,229 + -0.0 359,289 + +1.6 359,289 + -0.4 359,289 + -0.1 359,337 + GFF673 0.12 -0.7 359,337 + GFF673 0.12 -0.0 359,337 + GFF673 0.12 -0.0 359,337 + GFF673 0.12 +0.2 359,338 - GFF673 0.12 +0.2 359,338 - GFF673 0.12 -0.2 359,445 + GFF673 0.30 -0.2 359,445 + GFF673 0.30 -0.0 359,446 - GFF673 0.30 +0.6 359,446 - GFF673 0.30 -0.1 359,446 - GFF673 0.30 -1.2 359,446 - GFF673 0.30 -0.9 359,556 + GFF673 0.49 +0.1 359,565 + GFF673 0.50 -0.2 359,566 - GFF673 0.50 -0.2 359,608 - GFF673 0.57 +0.6 359,608 - GFF673 0.57 +1.8 359,608 - GFF673 0.57 +0.3 359,608 - GFF673 0.57 +0.5 359,703 + GFF673 0.73 -0.7 360,332 + GFF675 0.26 -0.4 360,332 + GFF675 0.26 -0.1 360,333 - GFF675 0.26 +1.8 360,333 - GFF675 0.26 +1.4 360,431 + GFF675 0.37 +1.1 360,431 + GFF675 0.37 +0.2 360,432 - GFF675 0.38 -1.4 360,432 - GFF675 0.38 +0.3 360,539 + GFF675 0.50 +0.1 360,539 + GFF675 0.50 +0.9 360,539 + GFF675 0.50 +0.4 360,539 + GFF675 0.50 -1.4 360,540 - GFF675 0.50 -0.0 360,540 - GFF675 0.50 +0.9 360,540 - GFF675 0.50 -0.4 360,540 - GFF675 0.50 +0.1 360,540 - GFF675 0.50 -0.0 360,545 + GFF675 0.51 +1.1 360,545 + GFF675 0.51 +0.4 360,545 + GFF675 0.51 -2.3 360,545 + GFF675 0.51 -0.3 360,545 + GFF675 0.51 +0.3 360,546 - GFF675 0.51 -0.1 360,546 - GFF675 0.51 -0.4 360,546 - GFF675 0.51 -0.2 360,546 - GFF675 0.51 +0.0 360,546 - GFF675 0.51 +0.5 360,546 - GFF675 0.51 -0.2 360,677 + GFF675 0.67 -0.1 360,677 + GFF675 0.67 -0.1 360,677 + GFF675 0.67 -1.7 360,677 + GFF675 0.67 +0.1 360,677 + GFF675 0.67 +0.4 360,677 + GFF675 0.67 +0.1 360,677 + GFF675 0.67 -0.2 360,677 + GFF675 0.67 +0.8 360,678 - GFF675 0.67 +0.8 360,743 + GFF675 0.74 +0.5 360,749 + GFF675 0.75 -0.2 360,749 + GFF675 0.75 -0.1 360,750 - GFF675 0.75 -0.6 360,750 - GFF675 0.75 -0.1 360,750 - GFF675 0.75 +0.3 360,932 + -0.2 360,932 + -0.1 360,932 + -1.1 360,932 + +0.1 360,932 + -0.4 360,932 + +0.1 360,932 + +0.1 360,932 + +1.1 360,933 - -0.3 360,933 - +0.6 360,933 - -0.1 360,933 - -0.1 360,933 - +0.9 361,014 + +0.9 361,014 + +0.2 361,014 + +0.3 361,014 + +0.4 361,015 - +0.5 361,015 - -0.1 361,015 - +0.1 361,015 - -1.7 361,016 + +0.3 361,016 + -1.8 361,017 - -0.1 361,017 - -1.9 361,017 - -0.6 361,017 - -0.3 361,017 - +0.3 361,017 - +0.5 361,017 - +0.1 361,018 + -0.7 361,018 + -2.6 361,018 + -0.8 361,018 + -1.2 361,018 + +0.6 361,018 + -0.9 361,019 - +0.1 361,019 - -0.5 361,280 + GFF676 0.31 -0.3 361,280 + GFF676 0.31 -0.5 361,281 - GFF676 0.31 +0.5 361,281 - GFF676 0.31 +1.0 361,305 - GFF676 0.35 +0.9 361,343 - GFF676 0.41 +0.1 361,391 + GFF676 0.48 -0.7 361,391 + GFF676 0.48 +0.3 361,391 + GFF676 0.48 -0.9 361,392 - GFF676 0.48 -0.5 361,523 + GFF676 0.68 -0.6 361,523 + GFF676 0.68 -0.7 361,523 + GFF676 0.68 -1.4 361,524 - GFF676 0.68 -0.2 361,577 + GFF676 0.76 -0.1 361,577 + GFF676 0.76 -0.4 361,578 - GFF676 0.76 -1.0 361,643 + GFF676 0.86 +0.8 361,643 + GFF676 0.86 -1.8 361,643 + GFF676 0.86 -1.3 361,643 + GFF676 0.86 -0.4 361,644 - GFF676 0.86 -0.8 361,676 + +0.1 361,676 + -1.0 361,676 + -1.1 361,677 - -1.1 361,677 - -0.3 361,677 - -0.0 361,677 - -1.5 361,677 - -0.4 361,677 - -0.1 361,677 - -0.4 361,821 + -0.6 361,821 + +0.4 361,821 + +0.4 361,821 + -0.4 361,821 + -0.1 361,821 + -0.8 361,821 + +0.4 361,821 + +1.5 361,821 + -0.3 361,822 - +1.4 361,822 - +0.1
Or see this region's nucleotide sequence