Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5718

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
2,742,450	+				-0.1
2,742,450	+				-0.0
2,742,450	+				+0.1
2,742,450	+				-0.0
2,742,451	-				+0.3
2,742,451	-				+0.3
2,742,650	+		GFF5717	0.27	-0.4
2,742,651	-		GFF5717	0.27	+0.8
2,742,651	-		GFF5717	0.27	-0.2
2,742,678	-		GFF5717	0.31	+0.3
2,742,717	-		GFF5717	0.37	-0.1
2,742,717	-		GFF5717	0.37	-0.1
2,742,717	-		GFF5717	0.37	-0.6
2,742,860	+		GFF5717	0.58	+0.0
2,742,861	-		GFF5717	0.58	-0.3
2,742,884	+		GFF5717	0.62	+0.8
2,742,884	+		GFF5717	0.62	+0.1
2,742,885	-		GFF5717	0.62	+0.2
2,742,885	-		GFF5717	0.62	-1.4
2,743,022	+		GFF5717	0.82	-0.6
2,743,023	-		GFF5717	0.83	+0.0
2,743,023	-		GFF5717	0.83	-0.4
2,743,084	+				+0.2
2,743,101	-				+0.1
2,743,101	-				-0.2
2,743,317	+				-0.2
2,743,401	+				+0.2
2,743,401	+				+0.3
2,744,022	+		GFF5718	0.23	-0.2
2,744,076	+		GFF5718	0.24	+0.5
2,744,077	-		GFF5718	0.24	-0.2
2,744,242	-		GFF5718	0.29	-1.1
2,744,938	-		GFF5718	0.49	+0.6
2,744,938	-		GFF5718	0.49	-0.3
2,745,066	+		GFF5718	0.52	+0.3
2,745,066	+		GFF5718	0.52	-1.1
2,745,067	-		GFF5718	0.52	+1.2
2,745,067	-		GFF5718	0.52	-0.7
2,745,085	-		GFF5718	0.53	-0.4
2,745,846	+		GFF5718	0.74	-0.0
2,745,846	+		GFF5718	0.74	-0.0
2,745,847	-		GFF5718	0.74	-1.4
2,745,847	-		GFF5718	0.74	-0.3
2,745,963	+		GFF5718	0.78	+1.4
2,745,990	+		GFF5718	0.78	+0.3
2,745,991	-		GFF5718	0.78	-0.3
2,746,050	+		GFF5718	0.80	-0.0
2,746,050	+		GFF5718	0.80	+0.1
2,746,051	-		GFF5718	0.80	-0.2
2,746,051	-		GFF5718	0.80	-0.4
2,746,051	-		GFF5718	0.80	+0.1
2,746,051	-		GFF5718	0.80	-0.3
2,746,051	-		GFF5718	0.80	-0.0
2,746,117	-		GFF5718	0.82	-0.2
2,746,461	+				-0.7
2,746,461	+				+0.7
2,746,462	-				-0.0
2,746,462	-				-1.0
2,746,911	-				-0.0
2,746,911	-				-0.8
2,746,947	-				+0.2
2,746,947	-				+0.4
2,747,187	-		GFF5719	0.22	+0.1
2,747,270	+		GFF5719	0.26	-0.8
2,747,270	+		GFF5719	0.26	-0.6
2,747,270	+		GFF5719	0.26	+0.2
2,747,270	+		GFF5719	0.26	-0.7
2,747,271	-		GFF5719	0.26	-0.3
2,747,490	-		GFF5719	0.38	-1.3
2,747,693	+		GFF5719	0.49	+0.5
2,747,694	-		GFF5719	0.49	-0.3
2,747,694	-		GFF5719	0.49	-0.1
2,747,694	-		GFF5719	0.49	-0.0
2,747,694	-		GFF5719	0.49	+0.8
2,747,720	+		GFF5719	0.51	-1.0
2,747,720	+		GFF5719	0.51	-0.3
2,747,720	+		GFF5719	0.51	+0.1
2,747,720	+		GFF5719	0.51	-0.4
2,747,721	-		GFF5719	0.51	-0.4
2,747,721	-		GFF5719	0.51	-0.4