Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5588

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
2,601,288	+				+0.8
2,601,449	+		GFF5587	0.22	+0.2
2,601,449	+		GFF5587	0.22	-0.3
2,601,449	+		GFF5587	0.22	-0.8
2,601,450	-		GFF5587	0.22	-0.3
2,601,586	+		GFF5587	0.40	-0.3
2,601,586	+		GFF5587	0.40	+0.2
2,601,587	-		GFF5587	0.40	-0.1
2,601,862	+		GFF5587	0.75	+0.3
2,601,863	-		GFF5587	0.75	+0.5
2,601,863	-		GFF5587	0.75	-0.2
2,602,119	+				+0.5
2,602,119	+				+0.1
2,602,119	+				-0.1
2,602,194	+		GFF5588	0.16	-0.2
2,602,194	+		GFF5588	0.16	+1.3
2,602,194	+		GFF5588	0.16	+0.3
2,602,194	+		GFF5588	0.16	-0.2
2,602,194	+		GFF5588	0.16	-0.2
2,602,194	+		GFF5588	0.16	-0.4
2,602,194	+		GFF5588	0.16	+0.2
2,602,195	-		GFF5588	0.16	+0.9
2,602,195	-		GFF5588	0.16	-0.2
2,602,195	-		GFF5588	0.16	+0.4
2,602,195	-		GFF5588	0.16	+1.2
2,602,195	-		GFF5588	0.16	-0.6
2,602,195	-		GFF5588	0.16	+0.2
2,602,431	+		GFF5588	0.40	+1.6
2,602,431	+		GFF5588	0.40	+0.2
2,602,431	+		GFF5588	0.40	-0.1
2,602,432	-		GFF5588	0.40	+0.5
2,602,432	-		GFF5588	0.40	-0.3
2,602,485	+		GFF5588	0.45	+1.7
2,602,485	+		GFF5588	0.45	+0.4
2,602,485	+		GFF5588	0.45	+0.6
2,602,486	-		GFF5588	0.46	+1.0
2,602,486	-		GFF5588	0.46	+0.4
2,602,486	-		GFF5588	0.46	+0.0
2,602,486	-		GFF5588	0.46	+0.7
2,602,606	-		GFF5588	0.58	+0.1
2,602,606	-		GFF5588	0.58	+0.7
2,602,818	+		GFF5588	0.79	+0.3
2,602,818	+		GFF5588	0.79	+0.1
2,602,819	-		GFF5588	0.79	-0.4
2,602,819	-		GFF5588	0.79	+0.3
2,602,819	-		GFF5588	0.79	-0.1
2,602,860	+		GFF5588	0.83	-0.4
2,602,860	+		GFF5588	0.83	+0.6
2,602,861	-		GFF5588	0.83	+0.3
2,602,863	+		GFF5588	0.83	-0.6
2,602,863	+		GFF5588	0.83	+1.6
2,602,864	-		GFF5588	0.83	-1.4
2,602,864	-		GFF5588	0.83	+0.2
2,602,864	-		GFF5588	0.83	+0.1
2,602,864	-		GFF5588	0.83	-0.1
2,602,899	+		GFF5588	0.87	+0.2
2,602,900	-		GFF5588	0.87	-0.3
2,603,009	+				+0.2
2,603,033	+				-0.4
2,603,034	-				-0.3
2,603,356	+		GFF5589	0.63	-0.6
2,603,356	+		GFF5589	0.63	+0.7
2,603,356	+		GFF5589	0.63	-0.0
2,603,357	-		GFF5589	0.63	-0.0
2,603,359	+		GFF5589	0.64	+0.0
2,603,359	+		GFF5589	0.64	-0.1
2,603,359	+		GFF5589	0.64	-0.2
2,603,359	+		GFF5589	0.64	-0.3
2,603,360	-		GFF5589	0.64	-0.2
2,603,360	-		GFF5589	0.64	+0.3
2,603,360	-		GFF5589	0.64	+0.1
2,603,360	-		GFF5589	0.64	-0.8
2,603,360	-		GFF5589	0.64	-0.6
2,603,360	-		GFF5589	0.64	+0.2
2,603,416	+		GFF5589	0.75	-0.3
2,603,416	+		GFF5589	0.75	-0.4
2,603,416	+		GFF5589	0.75	-0.3
2,603,742	-		GFF5590	0.18	-0.1
2,603,904	-		GFF5590	0.33	-0.0
2,603,904	-		GFF5590	0.33	+0.8