Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF538 and GFF539 overlap by 1 nucleotides GFF539 and GFF540 overlap by 4 nucleotides GFF540 and GFF541 are separated by 3 nucleotides
GFF538 - Hydantoin racemase (EC 5.1.99.-), at 207,441 to 208,184
GFF538
GFF539 - Transcriptional regulator, GntR family, at 208,184 to 208,879
GFF539
GFF540 - Putrescine transport system permease protein potI, at 208,876 to 209,769
GFF540
GFF541 - ABC transporter permease protein, at 209,773 to 210,771
GFF541
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1 at 208.033 kb on + strand, within GFF538 at 208.055 kb on - strand, within GFF538 at 208.055 kb on - strand, within GFF538 at 208.395 kb on + strand, within GFF539 at 208.396 kb on - strand, within GFF539 at 208.396 kb on - strand, within GFF539 at 208.396 kb on - strand, within GFF539 at 208.852 kb on - strand at 208.852 kb on - strand at 208.982 kb on + strand, within GFF540 at 209.309 kb on + strand, within GFF540 at 209.309 kb on + strand, within GFF540 at 209.310 kb on - strand, within GFF540 at 209.310 kb on - strand, within GFF540 at 209.441 kb on + strand, within GFF540 at 209.441 kb on + strand, within GFF540 at 209.442 kb on - strand, within GFF540 at 209.690 kb on + strand at 209.691 kb on - strand at 209.879 kb on + strand, within GFF541 at 209.879 kb on + strand, within GFF541 at 209.880 kb on - strand, within GFF541 at 210.135 kb on - strand, within GFF541 at 210.362 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.431 kb on + strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.432 kb on - strand, within GFF541 at 210.534 kb on - strand, within GFF541
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 208,033 + GFF538 0.80 +0.3 208,055 - GFF538 0.83 -0.1 208,055 - GFF538 0.83 -0.5 208,395 + GFF539 0.30 +0.8 208,396 - GFF539 0.30 -0.4 208,396 - GFF539 0.30 +0.4 208,396 - GFF539 0.30 +0.3 208,852 - +0.0 208,852 - +0.8 208,982 + GFF540 0.12 +0.7 209,309 + GFF540 0.48 -0.2 209,309 + GFF540 0.48 -1.5 209,310 - GFF540 0.49 +0.6 209,310 - GFF540 0.49 +0.5 209,441 + GFF540 0.63 -0.2 209,441 + GFF540 0.63 -0.2 209,442 - GFF540 0.63 +0.2 209,690 + +0.1 209,691 - -0.4 209,879 + GFF541 0.11 -0.3 209,879 + GFF541 0.11 +0.4 209,880 - GFF541 0.11 -0.4 210,135 - GFF541 0.36 -0.6 210,362 + GFF541 0.59 +0.5 210,431 + GFF541 0.66 -0.9 210,431 + GFF541 0.66 -0.4 210,432 - GFF541 0.66 -0.2 210,432 - GFF541 0.66 +0.0 210,534 - GFF541 0.76 +0.4
Or see this region's nucleotide sequence