Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF504 and GFF505 are separated by 44 nucleotides GFF505 and GFF506 are separated by 46 nucleotides
GFF504 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 171,165 to 172,331
GFF504
GFF505 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 172,376 to 173,542
GFF505
GFF506 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 173,589 to 175,445
GFF506
Position (kb) 172
173
174 Strain fitness (log2 ratio) -1
0
1 at 171.395 kb on - strand, within GFF504 at 171.401 kb on - strand, within GFF504 at 171.401 kb on - strand, within GFF504 at 171.515 kb on - strand, within GFF504 at 171.621 kb on - strand, within GFF504 at 171.725 kb on - strand, within GFF504 at 171.883 kb on + strand, within GFF504 at 171.883 kb on + strand, within GFF504 at 171.886 kb on + strand, within GFF504 at 171.928 kb on + strand, within GFF504 at 171.929 kb on - strand, within GFF504 at 172.094 kb on - strand, within GFF504 at 172.094 kb on - strand, within GFF504 at 172.094 kb on - strand, within GFF504 at 172.692 kb on + strand, within GFF505 at 172.719 kb on + strand, within GFF505 at 172.719 kb on + strand, within GFF505 at 172.768 kb on - strand, within GFF505 at 172.912 kb on - strand, within GFF505 at 173.133 kb on + strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.134 kb on - strand, within GFF505 at 173.298 kb on + strand, within GFF505 at 173.299 kb on - strand, within GFF505 at 173.621 kb on - strand at 173.924 kb on - strand, within GFF506 at 173.924 kb on - strand, within GFF506 at 174.112 kb on + strand, within GFF506 at 174.112 kb on + strand, within GFF506 at 174.113 kb on - strand, within GFF506 at 174.182 kb on - strand, within GFF506 at 174.299 kb on - strand, within GFF506
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 171,395 - GFF504 0.20 +0.7 171,401 - GFF504 0.20 +0.8 171,401 - GFF504 0.20 -0.5 171,515 - GFF504 0.30 +0.7 171,621 - GFF504 0.39 -0.3 171,725 - GFF504 0.48 +0.2 171,883 + GFF504 0.62 +0.4 171,883 + GFF504 0.62 -0.1 171,886 + GFF504 0.62 +0.2 171,928 + GFF504 0.65 +0.6 171,929 - GFF504 0.65 +0.2 172,094 - GFF504 0.80 +0.4 172,094 - GFF504 0.80 +0.9 172,094 - GFF504 0.80 +0.5 172,692 + GFF505 0.27 +1.1 172,719 + GFF505 0.29 +0.3 172,719 + GFF505 0.29 +1.1 172,768 - GFF505 0.34 +0.0 172,912 - GFF505 0.46 +0.1 173,133 + GFF505 0.65 -0.3 173,134 - GFF505 0.65 -0.3 173,134 - GFF505 0.65 -0.4 173,134 - GFF505 0.65 +0.0 173,134 - GFF505 0.65 +0.1 173,298 + GFF505 0.79 -0.3 173,299 - GFF505 0.79 -0.3 173,621 - +0.1 173,924 - GFF506 0.18 +0.2 173,924 - GFF506 0.18 -1.0 174,112 + GFF506 0.28 -0.0 174,112 + GFF506 0.28 -0.3 174,113 - GFF506 0.28 +1.6 174,182 - GFF506 0.32 +0.6 174,299 - GFF506 0.38 -0.5
Or see this region's nucleotide sequence