Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4925

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
1,939,684	+				+0.1
1,939,684	+				-1.6
1,939,685	-				+0.6
1,939,685	-				+0.6
1,939,777	+		GFF4924	0.17	-0.9
1,939,777	+		GFF4924	0.17	-0.1
1,939,777	+		GFF4924	0.17	-0.9
1,939,777	+		GFF4924	0.17	-0.5
1,939,777	+		GFF4924	0.17	-1.2
1,939,777	+		GFF4924	0.17	-0.4
1,939,777	+		GFF4924	0.17	-3.2
1,939,777	+		GFF4924	0.17	-1.3
1,939,777	+		GFF4924	0.17	-0.5
1,939,778	-		GFF4924	0.17	-0.6
1,939,778	-		GFF4924	0.17	-1.7
1,939,912	+		GFF4924	0.42	-4.7
1,939,912	+		GFF4924	0.42	-2.1
1,939,912	+		GFF4924	0.42	-1.4
1,939,912	+		GFF4924	0.42	-2.1
1,939,912	+		GFF4924	0.42	+0.2
1,939,913	-		GFF4924	0.42	-3.2
1,939,945	+		GFF4924	0.48	-0.0
1,939,946	-		GFF4924	0.48	-3.8
1,940,122	+		GFF4924	0.81	-4.6
1,940,122	+		GFF4924	0.81	-3.3
1,940,123	-		GFF4924	0.81	-0.7
1,940,143	+		GFF4924	0.85	-3.5
1,940,143	+		GFF4924	0.85	-3.0
1,940,144	-		GFF4924	0.85	-1.0
1,940,162	-		GFF4924	0.88	-3.2
1,940,293	+				-0.5
1,940,516	-				-1.0
1,940,541	+				-0.4
1,940,541	+				-0.5
1,940,541	+				-1.2
1,940,541	+				-1.1
1,940,542	-				+0.0
1,940,542	-				+0.2
1,940,542	-				-0.5
1,941,349	+		GFF4925	0.33	-1.8
1,941,509	-		GFF4925	0.40	-0.2
1,941,575	-		GFF4925	0.43	-0.3
1,941,575	-		GFF4925	0.43	-0.1
1,941,575	-		GFF4925	0.43	-2.1
1,941,575	-		GFF4925	0.43	-0.2
1,941,691	+		GFF4925	0.48	-0.7
1,941,691	+		GFF4925	0.48	-0.9
1,941,691	+		GFF4925	0.48	-0.9
1,941,692	-		GFF4925	0.48	-0.8
1,941,692	-		GFF4925	0.48	-1.6
1,941,856	+		GFF4925	0.55	-1.7
1,941,887	-		GFF4925	0.57	-1.8
1,941,917	-		GFF4925	0.58	-2.2
1,941,917	-		GFF4925	0.58	-2.3
1,941,917	-		GFF4925	0.58	-2.5
1,942,016	-		GFF4925	0.62	-2.7
1,942,016	-		GFF4925	0.62	-1.7
1,942,016	-		GFF4925	0.62	-0.8
1,942,016	-		GFF4925	0.62	-2.0
1,942,016	-		GFF4925	0.62	-1.7
1,942,016	-		GFF4925	0.62	-0.8
1,942,016	-		GFF4925	0.62	-2.5
1,942,153	+		GFF4925	0.68	-1.2
1,942,153	+		GFF4925	0.68	-2.5
1,942,153	+		GFF4925	0.68	-1.2
1,942,154	-		GFF4925	0.68	-1.2
1,942,154	-		GFF4925	0.68	-1.2
1,942,154	-		GFF4925	0.68	-2.0
1,942,154	-		GFF4925	0.68	-0.0
1,942,154	-		GFF4925	0.68	-1.8
1,942,154	-		GFF4925	0.68	-1.4
1,942,154	-		GFF4925	0.68	-1.1
1,942,300	+		GFF4925	0.74	-0.6
1,942,301	-		GFF4925	0.74	-1.9
1,942,624	+		GFF4925	0.88	-0.8
1,942,624	+		GFF4925	0.88	-2.2
1,942,625	-		GFF4925	0.88	-0.7
1,942,625	-		GFF4925	0.88	-1.7
1,942,634	-		GFF4925	0.89	-1.2
1,943,120	+		GFF4926	0.23	+0.9
1,943,120	+		GFF4926	0.23	-1.2
1,943,121	-		GFF4926	0.23	+0.6
1,943,330	+		GFF4926	0.47	+0.2
1,943,331	-		GFF4926	0.47	+1.0
1,943,378	+		GFF4926	0.53	+0.6
1,943,379	-		GFF4926	0.53	-0.5
1,943,379	-		GFF4926	0.53	-1.6
1,943,379	-		GFF4926	0.53	-0.5
1,943,379	-		GFF4926	0.53	-0.1
1,943,576	+		GFF4926	0.76	-0.1
1,943,771	+				-0.3
1,943,771	+				+0.0
1,943,772	-				-0.3