Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF485 and GFF486 are separated by 809 nucleotides GFF486 and GFF487 are separated by 11 nucleotides
GFF485 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 150,498 to 150,992
GFF485
GFF486 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 151,802 to 152,968
GFF486
GFF487 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 152,980 to 156,111
GFF487
Position (kb) 151
152
153 Strain fitness (log2 ratio) -1
0
1
2 at 150.871 kb on - strand, within GFF485 at 150.978 kb on + strand at 150.979 kb on - strand at 150.979 kb on - strand at 150.979 kb on - strand at 150.980 kb on + strand at 151.143 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.172 kb on + strand at 151.240 kb on + strand at 151.303 kb on + strand at 151.304 kb on - strand at 151.359 kb on + strand at 151.414 kb on + strand at 151.414 kb on + strand at 151.415 kb on - strand at 151.415 kb on - strand at 151.465 kb on - strand at 151.516 kb on + strand at 151.517 kb on - strand at 151.594 kb on - strand at 151.594 kb on - strand at 151.947 kb on + strand, within GFF486 at 151.947 kb on + strand, within GFF486 at 151.979 kb on + strand, within GFF486 at 152.735 kb on + strand, within GFF486 at 152.735 kb on + strand, within GFF486 at 152.735 kb on + strand, within GFF486 at 152.735 kb on + strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.736 kb on - strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.741 kb on + strand, within GFF486 at 152.742 kb on - strand, within GFF486 at 152.742 kb on - strand, within GFF486 at 152.742 kb on - strand, within GFF486 at 152.742 kb on - strand, within GFF486 at 152.742 kb on - strand, within GFF486 at 153.389 kb on - strand, within GFF487 at 153.724 kb on + strand, within GFF487
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 150,871 - GFF485 0.75 +0.3 150,978 + -0.6 150,979 - -0.4 150,979 - -0.3 150,979 - +1.2 150,980 + -0.2 151,143 + +0.1 151,172 + +1.0 151,172 + -0.1 151,172 + -0.0 151,172 + +0.2 151,240 + -0.6 151,303 + +0.6 151,304 - +0.5 151,359 + -0.6 151,414 + -0.8 151,414 + -0.7 151,415 - +0.5 151,415 - +0.8 151,465 - +0.1 151,516 + +0.2 151,517 - -0.7 151,594 - -0.4 151,594 - -0.0 151,947 + GFF486 0.12 +0.7 151,947 + GFF486 0.12 +0.4 151,979 + GFF486 0.15 -0.4 152,735 + GFF486 0.80 -0.8 152,735 + GFF486 0.80 +0.5 152,735 + GFF486 0.80 +0.3 152,735 + GFF486 0.80 -1.6 152,736 - GFF486 0.80 +0.2 152,736 - GFF486 0.80 +0.1 152,736 - GFF486 0.80 -0.1 152,736 - GFF486 0.80 +0.7 152,736 - GFF486 0.80 +0.7 152,736 - GFF486 0.80 +0.6 152,736 - GFF486 0.80 -0.5 152,741 + GFF486 0.80 -1.0 152,741 + GFF486 0.80 +0.2 152,741 + GFF486 0.80 -0.4 152,741 + GFF486 0.80 +2.2 152,741 + GFF486 0.80 +1.3 152,741 + GFF486 0.80 -0.1 152,742 - GFF486 0.81 +0.0 152,742 - GFF486 0.81 -0.1 152,742 - GFF486 0.81 +0.6 152,742 - GFF486 0.81 -0.0 152,742 - GFF486 0.81 -0.1 153,389 - GFF487 0.13 -0.0 153,724 + GFF487 0.24 -0.1
Or see this region's nucleotide sequence