Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4823

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
1,833,144	+				-0.4
1,833,144	+				+0.7
1,833,144	+				-0.3
1,833,144	+				-0.2
1,833,144	+				-1.5
1,833,145	-				-0.2
1,833,145	-				+0.4
1,833,145	-				-0.4
1,833,196	+				-0.3
1,833,196	+				-0.4
1,833,197	-				-0.6
1,833,197	-				+0.6
1,833,712	-		GFF4822	0.79	-0.1
1,833,847	-				+0.2
1,834,165	+		GFF4823	0.48	-0.1
1,834,165	+		GFF4823	0.48	+0.5
1,834,165	+		GFF4823	0.48	+0.3
1,834,166	-		GFF4823	0.48	-0.1
1,834,267	+		GFF4823	0.64	+0.9
1,834,267	+		GFF4823	0.64	-0.1
1,834,267	+		GFF4823	0.64	+0.1
1,834,267	+		GFF4823	0.64	-0.7
1,834,267	+		GFF4823	0.64	+1.2
1,834,267	+		GFF4823	0.64	+0.4
1,834,267	+		GFF4823	0.64	-0.3
1,834,267	+		GFF4823	0.64	+0.2
1,834,267	+		GFF4823	0.64	-1.6
1,834,267	+		GFF4823	0.64	-0.4
1,834,267	+		GFF4823	0.64	+1.2
1,834,267	+		GFF4823	0.64	-1.1
1,834,268	-		GFF4823	0.64	-0.0
1,834,268	-		GFF4823	0.64	+0.1
1,834,268	-		GFF4823	0.64	-0.2
1,834,268	-		GFF4823	0.64	+0.3
1,834,573	-				-0.4
1,834,629	+		GFF4824	0.10	-1.6
1,834,629	+		GFF4824	0.10	-0.3
1,834,630	-		GFF4824	0.10	-0.2
1,834,630	-		GFF4824	0.10	-0.8
1,834,630	-		GFF4824	0.10	-1.4
1,834,630	-		GFF4824	0.10	-0.2
1,834,630	-		GFF4824	0.10	-0.1
1,834,630	-		GFF4824	0.10	-1.0
1,834,695	+		GFF4824	0.16	+0.8
1,834,695	+		GFF4824	0.16	-0.3
1,834,695	+		GFF4824	0.16	+0.4
1,834,695	+		GFF4824	0.16	+0.1
1,834,696	-		GFF4824	0.16	-0.2
1,834,696	-		GFF4824	0.16	+0.9
1,834,696	-		GFF4824	0.16	+0.1
1,834,810	-		GFF4824	0.26	-0.1
1,834,866	+		GFF4824	0.31	-0.3
1,834,867	-		GFF4824	0.31	+0.2
1,834,867	-		GFF4824	0.31	-1.2
1,835,224	-		GFF4824	0.62	+0.2
1,835,340	+		GFF4824	0.71	-0.1
1,835,340	+		GFF4824	0.71	+0.9
1,835,367	+		GFF4824	0.74	+0.2
1,835,368	-		GFF4824	0.74	+1.8
1,835,368	-		GFF4824	0.74	-0.5
1,835,379	+		GFF4824	0.75	-0.4
1,835,379	+		GFF4824	0.75	-0.1
1,835,380	-		GFF4824	0.75	+2.4
1,835,463	+		GFF4824	0.82	-0.8
1,835,463	+		GFF4824	0.82	+0.5
1,835,464	-		GFF4824	0.82	-0.3
1,835,490	+		GFF4824	0.84	+0.6
1,835,491	-		GFF4824	0.84	+0.1
1,835,491	-		GFF4824	0.84	+0.1