Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF357 and GFF358 are separated by 4 nucleotides GFF358 and GFF359 are separated by 163 nucleotides GFF359 and GFF360 are separated by 3 nucleotides
GFF357 - Transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 19,743 to 20,930
GFF357
GFF358 - FIG074102: hypothetical protein, at 20,935 to 22,062
GFF358
GFF359 - hypothetical protein, at 22,226 to 22,483
GFF359
GFF360 - ABC-type multidrug transport system, permease component, at 22,487 to 23,308
GFF360
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.064 kb on + strand, within GFF357 at 20.064 kb on + strand, within GFF357 at 20.065 kb on - strand, within GFF357 at 20.268 kb on + strand, within GFF357 at 20.269 kb on - strand, within GFF357 at 20.269 kb on - strand, within GFF357 at 20.455 kb on - strand, within GFF357 at 20.590 kb on - strand, within GFF357 at 20.799 kb on + strand, within GFF357 at 20.800 kb on - strand, within GFF357 at 21.010 kb on + strand at 21.011 kb on - strand at 21.301 kb on + strand, within GFF358 at 21.302 kb on - strand, within GFF358 at 21.307 kb on + strand, within GFF358 at 21.307 kb on + strand, within GFF358 at 21.308 kb on - strand, within GFF358 at 21.350 kb on + strand, within GFF358 at 21.403 kb on + strand, within GFF358 at 21.404 kb on - strand, within GFF358 at 21.556 kb on + strand, within GFF358 at 21.556 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.607 kb on + strand, within GFF358 at 21.703 kb on + strand, within GFF358 at 21.704 kb on - strand, within GFF358 at 21.704 kb on - strand, within GFF358 at 21.767 kb on - strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.775 kb on + strand, within GFF358 at 21.776 kb on - strand, within GFF358 at 21.776 kb on - strand, within GFF358 at 21.781 kb on + strand, within GFF358 at 21.781 kb on + strand, within GFF358 at 21.782 kb on - strand, within GFF358 at 21.782 kb on - strand, within GFF358 at 22.083 kb on + strand at 22.084 kb on - strand at 22.116 kb on + strand at 22.144 kb on - strand at 22.445 kb on + strand, within GFF359 at 22.445 kb on + strand, within GFF359 at 22.445 kb on + strand, within GFF359 at 22.446 kb on - strand, within GFF359 at 22.488 kb on + strand at 22.488 kb on + strand at 22.488 kb on + strand at 22.489 kb on - strand at 22.545 kb on + strand at 22.545 kb on + strand at 22.545 kb on + strand at 22.545 kb on + strand at 22.546 kb on - strand at 22.546 kb on - strand at 22.546 kb on - strand at 22.546 kb on - strand at 22.734 kb on + strand, within GFF360 at 22.734 kb on + strand, within GFF360 at 22.735 kb on - strand, within GFF360 at 22.735 kb on - strand, within GFF360 at 22.737 kb on + strand, within GFF360 at 22.737 kb on + strand, within GFF360 at 22.752 kb on + strand, within GFF360 at 22.753 kb on - strand, within GFF360 at 23.013 kb on + strand, within GFF360 at 23.013 kb on + strand, within GFF360 at 23.014 kb on - strand, within GFF360
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 20,064 + GFF357 0.27 +1.2 20,064 + GFF357 0.27 +0.5 20,065 - GFF357 0.27 +0.3 20,268 + GFF357 0.44 -0.7 20,269 - GFF357 0.44 -0.1 20,269 - GFF357 0.44 -1.3 20,455 - GFF357 0.60 -0.2 20,590 - GFF357 0.71 +0.8 20,799 + GFF357 0.89 -0.6 20,800 - GFF357 0.89 +0.3 21,010 + -0.0 21,011 - +0.7 21,301 + GFF358 0.32 +0.0 21,302 - GFF358 0.33 +1.3 21,307 + GFF358 0.33 +0.8 21,307 + GFF358 0.33 -1.0 21,308 - GFF358 0.33 +1.0 21,350 + GFF358 0.37 +0.3 21,403 + GFF358 0.41 -0.1 21,404 - GFF358 0.42 -2.1 21,556 + GFF358 0.55 +0.3 21,556 + GFF358 0.55 -0.7 21,607 + GFF358 0.60 -0.2 21,607 + GFF358 0.60 +1.1 21,607 + GFF358 0.60 -0.3 21,607 + GFF358 0.60 +1.3 21,703 + GFF358 0.68 +0.5 21,704 - GFF358 0.68 -0.3 21,704 - GFF358 0.68 +0.3 21,767 - GFF358 0.74 +0.4 21,775 + GFF358 0.74 -0.7 21,775 + GFF358 0.74 -0.4 21,775 + GFF358 0.74 +0.4 21,776 - GFF358 0.75 +0.1 21,776 - GFF358 0.75 +1.5 21,781 + GFF358 0.75 -0.5 21,781 + GFF358 0.75 +0.4 21,782 - GFF358 0.75 +0.5 21,782 - GFF358 0.75 -0.1 22,083 + -0.2 22,084 - -0.5 22,116 + -0.4 22,144 - +2.3 22,445 + GFF359 0.85 +1.8 22,445 + GFF359 0.85 -0.4 22,445 + GFF359 0.85 +1.9 22,446 - GFF359 0.85 +0.0 22,488 + +0.1 22,488 + -0.2 22,488 + -1.0 22,489 - +1.0 22,545 + -0.4 22,545 + -0.0 22,545 + +0.6 22,545 + -0.5 22,546 - +0.5 22,546 - +0.8 22,546 - +0.4 22,546 - +1.4 22,734 + GFF360 0.30 -0.3 22,734 + GFF360 0.30 -0.8 22,735 - GFF360 0.30 +1.4 22,735 - GFF360 0.30 -0.1 22,737 + GFF360 0.30 +0.1 22,737 + GFF360 0.30 +0.2 22,752 + GFF360 0.32 +0.2 22,753 - GFF360 0.32 -0.6 23,013 + GFF360 0.64 +0.5 23,013 + GFF360 0.64 -0.4 23,014 - GFF360 0.64 +0.9
Or see this region's nucleotide sequence