Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3498 and GFF3499 are separated by 421 nucleotides GFF3499 and GFF3500 are separated by 51 nucleotides
GFF3498 - DNA repair protein RadC, at 377,431 to 377,952
GFF3498
GFF3499 - hypothetical protein, at 378,374 to 379,195
GFF3499
GFF3500 - Mll5900 protein, at 379,247 to 379,549
GFF3500
Position (kb) 378
379
380 Strain fitness (log2 ratio) -1
0
1
2 at 377.690 kb on + strand, within GFF3498 at 377.690 kb on + strand, within GFF3498 at 377.691 kb on - strand, within GFF3498 at 377.876 kb on + strand, within GFF3498 at 378.106 kb on + strand at 378.106 kb on + strand at 378.107 kb on - strand at 378.331 kb on + strand at 378.332 kb on - strand at 378.419 kb on + strand at 378.548 kb on + strand, within GFF3499 at 378.549 kb on - strand, within GFF3499 at 378.645 kb on + strand, within GFF3499 at 378.720 kb on + strand, within GFF3499 at 378.721 kb on - strand, within GFF3499 at 379.127 kb on + strand at 379.127 kb on + strand at 379.127 kb on + strand at 379.127 kb on + strand at 379.128 kb on - strand at 379.128 kb on - strand at 379.128 kb on - strand at 379.131 kb on + strand at 379.198 kb on + strand at 379.198 kb on + strand at 379.198 kb on + strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.209 kb on + strand at 379.210 kb on - strand at 379.224 kb on + strand at 379.224 kb on + strand at 379.245 kb on - strand at 379.245 kb on - strand at 379.422 kb on + strand, within GFF3500 at 379.573 kb on + strand at 379.574 kb on - strand at 379.785 kb on + strand at 379.785 kb on + strand at 379.786 kb on - strand at 379.981 kb on + strand at 379.982 kb on - strand at 379.982 kb on - strand at 380.025 kb on + strand at 380.026 kb on - strand at 380.026 kb on - strand at 380.060 kb on + strand at 380.067 kb on + strand at 380.067 kb on + strand at 380.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 377,690 + GFF3498 0.50 +0.6 377,690 + GFF3498 0.50 +0.3 377,691 - GFF3498 0.50 +0.2 377,876 + GFF3498 0.85 -0.0 378,106 + -0.2 378,106 + -0.3 378,107 - -0.2 378,331 + +2.6 378,332 - -0.2 378,419 + +0.3 378,548 + GFF3499 0.21 +0.8 378,549 - GFF3499 0.21 -0.6 378,645 + GFF3499 0.33 +0.7 378,720 + GFF3499 0.42 +0.9 378,721 - GFF3499 0.42 -0.8 379,127 + +0.3 379,127 + +0.1 379,127 + -0.6 379,127 + -0.4 379,128 - +0.3 379,128 - -0.4 379,128 - -1.4 379,131 + -0.1 379,198 + +0.2 379,198 + +0.1 379,198 + +0.2 379,199 - -0.2 379,199 - -0.0 379,199 - -0.2 379,199 - +0.8 379,209 + +0.5 379,210 - +0.8 379,224 + -0.1 379,224 + -1.6 379,245 - -0.2 379,245 - +1.2 379,422 + GFF3500 0.58 -0.2 379,573 + +0.2 379,574 - +0.2 379,785 + +0.5 379,785 + +0.9 379,786 - +0.1 379,981 + +0.1 379,982 - -0.3 379,982 - -1.2 380,025 + +0.8 380,026 - -0.5 380,026 - -0.0 380,060 + -0.3 380,067 + -0.3 380,067 + -0.8 380,115 + +0.1
Or see this region's nucleotide sequence