Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3420 and GFF3421 are separated by 268 nucleotides GFF3421 and GFF3422 are separated by 137 nucleotides GFF3422 and GFF3423 are separated by 125 nucleotides
GFF3420 - Acetylornithine aminotransferase (EC 2.6.1.11), at 304,596 to 305,795
GFF3420
GFF3421 - Histone acetyltransferase HPA2 and related acetyltransferases, at 306,064 to 306,384
GFF3421
GFF3422 - SSU ribosomal protein S20p, at 306,522 to 306,821
GFF3422
GFF3423 - Proposed peptidoglycan lipid II flippase MurJ, at 306,947 to 308,506
GFF3423
Position (kb) 306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 305.182 kb on + strand, within GFF3420 at 305.183 kb on - strand, within GFF3420 at 305.183 kb on - strand, within GFF3420 at 305.444 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.569 kb on + strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.678 kb on - strand at 305.866 kb on + strand at 305.867 kb on - strand at 305.867 kb on - strand at 305.925 kb on + strand at 305.925 kb on + strand at 305.963 kb on + strand at 305.964 kb on - strand at 305.965 kb on + strand at 305.966 kb on - strand at 305.968 kb on - strand at 305.972 kb on + strand at 305.978 kb on - strand at 305.978 kb on - strand at 305.978 kb on - strand at 306.211 kb on + strand, within GFF3421 at 306.211 kb on + strand, within GFF3421 at 306.211 kb on + strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 305,182 + GFF3420 0.49 -1.6 305,183 - GFF3420 0.49 -1.0 305,183 - GFF3420 0.49 -1.2 305,444 - GFF3420 0.71 -1.6 305,567 - GFF3420 0.81 -1.6 305,567 - GFF3420 0.81 +0.7 305,567 - GFF3420 0.81 -1.6 305,567 - GFF3420 0.81 -1.1 305,569 + GFF3420 0.81 -1.2 305,570 - GFF3420 0.81 -1.0 305,570 - GFF3420 0.81 +1.1 305,570 - GFF3420 0.81 -1.0 305,570 - GFF3420 0.81 -1.1 305,678 - -0.4 305,866 + +0.8 305,867 - +0.0 305,867 - -0.3 305,925 + -0.2 305,925 + -0.8 305,963 + -0.4 305,964 - -0.2 305,965 + -1.2 305,966 - -1.4 305,968 - -0.9 305,972 + +1.1 305,978 - -0.1 305,978 - -0.7 305,978 - +0.7 306,211 + GFF3421 0.46 +0.2 306,211 + GFF3421 0.46 +1.3 306,211 + GFF3421 0.46 -0.9 306,212 - GFF3421 0.46 -1.6 306,212 - GFF3421 0.46 +0.6 306,212 - GFF3421 0.46 +1.0 306,212 - GFF3421 0.46 +0.3 306,212 - GFF3421 0.46 -2.3 306,212 - GFF3421 0.46 +0.2 306,212 - GFF3421 0.46 -0.0 306,212 - GFF3421 0.46 +0.4 306,212 - GFF3421 0.46 +0.1 306,872 - -1.1
Or see this region's nucleotide sequence