Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3266 and GFF3267 are separated by 4 nucleotides GFF3267 and GFF3268 are separated by 7 nucleotides GFF3268 and GFF3269 are separated by 108 nucleotides GFF3269 and GFF3270 overlap by 17 nucleotides
GFF3266 - Urease beta subunit (EC 3.5.1.5), at 148,749 to 149,054
GFF3266
GFF3267 - HupE-UreJ family metal transporter, at 149,059 to 149,631
GFF3267
GFF3268 - Urease gamma subunit (EC 3.5.1.5), at 149,639 to 149,941
GFF3268
GFF3269 - Two-component hybrid sensor and regulator, at 150,050 to 153,520
GFF3269
GFF3270 - Two-component response regulator, at 153,504 to 154,517
GFF3270
Position (kb) 150
151
152
153
154 Strain fitness (log2 ratio) -1
0
1 at 149.847 kb on + strand, within GFF3268 at 149.977 kb on + strand at 149.977 kb on + strand at 149.977 kb on + strand at 149.978 kb on - strand at 150.186 kb on - strand at 150.309 kb on - strand at 150.473 kb on + strand, within GFF3269 at 150.525 kb on - strand, within GFF3269 at 150.525 kb on - strand, within GFF3269 at 151.017 kb on - strand, within GFF3269 at 151.380 kb on - strand, within GFF3269 at 151.547 kb on + strand, within GFF3269 at 151.551 kb on - strand, within GFF3269 at 151.775 kb on + strand, within GFF3269 at 151.776 kb on - strand, within GFF3269 at 151.952 kb on + strand, within GFF3269 at 152.205 kb on - strand, within GFF3269 at 152.205 kb on - strand, within GFF3269 at 152.442 kb on - strand, within GFF3269 at 153.371 kb on + strand at 153.633 kb on + strand, within GFF3270 at 154.338 kb on + strand, within GFF3270 at 154.339 kb on - strand, within GFF3270
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 149,847 + GFF3268 0.69 +0.6 149,977 + -0.7 149,977 + -0.0 149,977 + +0.4 149,978 - -1.5 150,186 - -0.6 150,309 - +0.4 150,473 + GFF3269 0.12 +0.2 150,525 - GFF3269 0.14 -0.2 150,525 - GFF3269 0.14 +0.7 151,017 - GFF3269 0.28 -0.5 151,380 - GFF3269 0.38 -1.5 151,547 + GFF3269 0.43 -0.7 151,551 - GFF3269 0.43 +0.2 151,775 + GFF3269 0.50 -0.3 151,776 - GFF3269 0.50 -0.0 151,952 + GFF3269 0.55 +0.6 152,205 - GFF3269 0.62 -0.5 152,205 - GFF3269 0.62 -0.3 152,442 - GFF3269 0.69 -0.5 153,371 + -0.9 153,633 + GFF3270 0.13 +1.0 154,338 + GFF3270 0.82 +0.0 154,339 - GFF3270 0.82 -0.5
Or see this region's nucleotide sequence