Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3175

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3173 and GFF3174 are separated by 4 nucleotidesGFF3174 and GFF3175 are separated by 265 nucleotides GFF3173 - Sensor kinase, at 50,038 to 51,882 GFF3173 GFF3174 - response regulator, NarL-family, at 51,887 to 52,582 GFF3174 GFF3175 - cytochrome c family protein, at 52,848 to 54,902 GFF3175 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -1 0 1 2at 51.966 kb on + strand, within GFF3174at 52.033 kb on - strand, within GFF3174at 52.764 kb on + strandat 52.818 kb on + strandat 52.818 kb on + strandat 52.819 kb on - strandat 53.626 kb on + strand, within GFF3175at 54.229 kb on - strand, within GFF3175at 54.357 kb on + strand, within GFF3175at 54.423 kb on + strand, within GFF3175at 55.076 kb on - strandat 55.261 kb on + strandat 55.398 kb on + strandat 55.544 kb on + strandat 55.640 kb on + strandat 55.707 kb on - strandat 55.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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51,966 + GFF3174 0.11 +0.9
52,033 - GFF3174 0.21 +0.1
52,764 + +0.7
52,818 + -0.6
52,818 + -0.2
52,819 - +2.0
53,626 + GFF3175 0.38 -0.5
54,229 - GFF3175 0.67 -0.5
54,357 + GFF3175 0.73 -0.8
54,423 + GFF3175 0.77 -0.2
55,076 - -1.0
55,261 + -0.1
55,398 + +0.4
55,544 + -0.3
55,640 + +0.2
55,707 - -0.0
55,707 - +1.5

Or see this region's nucleotide sequence