Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3126

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
2,050	+		GFF3124	0.21	+0.4
2,050	+		GFF3124	0.21	+0.4
2,051	-		GFF3124	0.21	-0.5
2,051	-		GFF3124	0.21	-0.3
2,051	-		GFF3124	0.21	+0.0
2,229	+		GFF3124	0.78	-0.0
2,229	+		GFF3124	0.78	+0.0
2,230	-		GFF3124	0.78	-0.9
2,232	+		GFF3124	0.79	+0.8
2,575	+				-0.0
2,576	-				-0.2
2,576	-				+0.5
2,576	-				+1.0
2,624	+				+0.2
2,898	+				-0.1
2,898	+				+0.0
2,898	+				-0.5
2,898	+				-0.5
2,899	-				+0.2
2,929	-				-0.4
3,035	+		GFF3126	0.67	-0.7
3,036	-		GFF3126	0.67	-0.4
3,080	+				+0.3
3,183	+				+0.1
3,331	+				+0.2
3,331	+				+0.7
3,332	-				-0.7
3,332	-				+0.1
3,433	+				-0.6
3,433	+				+1.0
3,433	+				-0.3
3,440	-				-0.0
3,527	-				+0.2
3,613	+				+1.1
3,614	-				-0.4
3,614	-				-0.2
3,686	-				-0.6
3,686	-				-1.0
3,718	-				+0.1
3,718	-				-0.1
3,910	+				-0.5
3,911	-				-0.2
3,911	-				+0.2
3,913	+				+0.3
3,913	+				+0.2
3,913	+				+0.2
3,913	+				-0.0
3,914	-				+0.3
3,914	-				-0.5
3,914	-				-1.8
3,914	-				+0.7
3,914	-				-0.4
3,927	+				-0.0
3,928	-				-0.2
3,929	+				+0.6
3,930	-				+0.8
3,944	+				+0.2
3,973	+				-0.3
3,974	-				-0.0
3,996	-				+0.3