Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3110 and GFF3111 are separated by 14 nucleotides GFF3111 and GFF3112 are separated by 7 nucleotides GFF3112 and GFF3114 are separated by 66 nucleotides GFF3114 and GFF3115 are separated by 78 nucleotides
GFF3110 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 186,291 to 187,340
GFF3110
GFF3111 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 187,355 to 188,155
GFF3111
GFF3112 - Uracil-DNA glycosylase, family 1, at 188,163 to 188,894
GFF3112
GFF3114 - tRNA-Tyr-GTA, at 188,961 to 189,043
GFF3114
GFF3115 - tRNA-Gly-TCC, at 189,122 to 189,192
GFF3115
Position (kb) 187
188
189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 186.975 kb on + strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 186.976 kb on - strand, within GFF3110 at 187.227 kb on + strand, within GFF3110 at 187.227 kb on + strand, within GFF3110 at 187.228 kb on - strand, within GFF3110 at 187.228 kb on - strand, within GFF3110 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.601 kb on + strand, within GFF3111 at 187.602 kb on - strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.757 kb on + strand, within GFF3111 at 187.758 kb on - strand, within GFF3111 at 187.758 kb on - strand, within GFF3111 at 189.065 kb on + strand at 189.065 kb on + strand at 189.065 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 186,975 + GFF3110 0.65 -0.0 186,976 - GFF3110 0.65 -3.4 186,976 - GFF3110 0.65 -2.9 186,976 - GFF3110 0.65 -1.6 186,976 - GFF3110 0.65 -2.9 187,227 + GFF3110 0.89 +0.6 187,227 + GFF3110 0.89 -4.2 187,228 - GFF3110 0.89 -3.5 187,228 - GFF3110 0.89 -3.0 187,601 + GFF3111 0.31 -1.4 187,601 + GFF3111 0.31 -2.5 187,601 + GFF3111 0.31 -1.7 187,601 + GFF3111 0.31 -2.7 187,602 - GFF3111 0.31 -0.0 187,757 + GFF3111 0.50 -2.6 187,757 + GFF3111 0.50 -2.9 187,757 + GFF3111 0.50 -3.2 187,757 + GFF3111 0.50 -2.4 187,757 + GFF3111 0.50 -2.8 187,758 - GFF3111 0.50 -2.0 187,758 - GFF3111 0.50 -2.0 189,065 + -1.2 189,065 + +0.5 189,065 + +0.6
Or see this region's nucleotide sequence