Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2926

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
9,264	+		GFF2924	0.72	+0.4
9,264	+		GFF2924	0.72	-0.1
9,264	+		GFF2924	0.72	-0.2
9,264	+		GFF2924	0.72	+0.9
9,264	+		GFF2924	0.72	+0.6
9,264	+		GFF2924	0.72	+0.4
9,264	+		GFF2924	0.72	+0.7
9,265	-		GFF2924	0.72	+0.2
9,265	-		GFF2924	0.72	+1.4
9,265	-		GFF2924	0.72	+0.9
9,265	-		GFF2924	0.72	-0.0
9,265	-		GFF2924	0.72	-2.4
9,265	-		GFF2924	0.72	+0.7
9,333	+		GFF2924	0.82	-0.0
9,333	+		GFF2924	0.82	+0.8
9,333	+		GFF2924	0.82	-0.4
9,333	+		GFF2924	0.82	+0.5
9,333	+		GFF2924	0.82	-0.1
9,333	+		GFF2924	0.82	+0.3
9,333	+		GFF2924	0.82	+0.3
9,334	-		GFF2924	0.82	-1.0
9,334	-		GFF2924	0.82	-0.1
9,334	-		GFF2924	0.82	-0.4
9,334	-		GFF2924	0.82	+0.7
9,334	-		GFF2924	0.82	+0.7
9,334	-		GFF2924	0.82	+1.2
9,363	+		GFF2924	0.86	-0.8
9,363	+		GFF2924	0.86	-0.3
9,363	+		GFF2924	0.86	-0.5
9,363	+		GFF2924	0.86	+0.7
9,363	+		GFF2924	0.86	-1.4
9,363	+		GFF2924	0.86	-0.6
9,364	-		GFF2924	0.87	-0.3
9,364	-		GFF2924	0.87	-0.8
9,364	-		GFF2924	0.87	-0.9
9,364	-		GFF2924	0.87	-0.2
9,364	-		GFF2924	0.87	-0.6
9,364	-		GFF2924	0.87	-0.5
9,364	-		GFF2924	0.87	-0.7
9,364	-		GFF2924	0.87	+0.4
9,364	-		GFF2924	0.87	-0.9
9,456	+				-0.3
9,456	+				+0.0
9,456	+				-0.1
9,457	-				+0.8
9,488	-				+0.3
9,529	+				-0.4
9,529	+				-0.8
9,530	-		GFF2925	0.10	-0.2
9,530	-		GFF2925	0.10	-0.2
9,530	-		GFF2925	0.10	+1.6
9,538	+		GFF2925	0.12	-0.4
9,539	-		GFF2925	0.12	-0.0
9,754	+		GFF2925	0.62	+0.6
9,754	+		GFF2925	0.62	-0.8
9,754	+		GFF2925	0.62	-0.3
9,754	+		GFF2925	0.62	-0.8
9,754	+		GFF2925	0.62	+0.2
9,754	+		GFF2925	0.62	-0.2
9,754	+		GFF2925	0.62	+0.5
9,754	+		GFF2925	0.62	-0.7
9,754	+		GFF2925	0.62	+1.0
9,754	+		GFF2925	0.62	-0.1
9,754	+		GFF2925	0.62	+0.2
9,755	-		GFF2925	0.62	+1.2
9,755	-		GFF2925	0.62	-0.2
9,755	-		GFF2925	0.62	-0.0
9,755	-		GFF2925	0.62	-0.0
9,755	-		GFF2925	0.62	-0.3
9,755	-		GFF2925	0.62	+0.4
9,778	+		GFF2925	0.68	-0.6
9,779	-		GFF2925	0.68	-0.3
9,779	-		GFF2925	0.68	-0.0
9,779	-		GFF2925	0.68	-0.3
9,917	+				-0.4
9,917	+				+0.0
9,917	+				+0.2
9,917	-				-0.3
9,918	-				-2.1
10,405	+		GFF2926	0.36	+1.6
10,405	+		GFF2926	0.36	-0.3
10,405	+		GFF2926	0.36	-0.6
10,405	+		GFF2926	0.36	-0.1
10,405	+		GFF2926	0.36	-0.5
10,405	+		GFF2926	0.36	-1.6
10,405	+		GFF2926	0.36	+0.8
10,405	+		GFF2926	0.36	-0.9
10,405	+		GFF2926	0.36	-0.3
10,405	+		GFF2926	0.36	-1.0
10,405	+		GFF2926	0.36	+1.6
10,405	+		GFF2926	0.36	-1.5
10,405	+		GFF2926	0.36	+0.4
10,405	+		GFF2926	0.36	-0.3
10,406	-		GFF2926	0.36	-0.8
10,406	-		GFF2926	0.36	-1.5
10,406	-		GFF2926	0.36	+1.4
10,406	-		GFF2926	0.36	+0.6
10,406	-		GFF2926	0.36	-0.1
10,406	-		GFF2926	0.36	-0.1
10,406	-		GFF2926	0.36	-0.3
10,406	-		GFF2926	0.36	-0.2
10,406	-		GFF2926	0.36	-0.2
10,406	-		GFF2926	0.36	-0.6
10,406	-		GFF2926	0.36	+0.8
10,406	-		GFF2926	0.36	+0.1
10,406	-		GFF2926	0.36	+0.4
10,450	+		GFF2926	0.40	-0.5
10,522	+		GFF2926	0.46	-0.3
10,522	+		GFF2926	0.46	-0.1
10,522	+		GFF2926	0.46	+0.9
10,522	+		GFF2926	0.46	+0.6
10,522	+		GFF2926	0.46	+0.0
10,522	+		GFF2926	0.46	-0.1
10,522	+		GFF2926	0.46	-0.0
10,522	+		GFF2926	0.46	-0.4
10,522	+		GFF2926	0.46	+1.0
10,522	+		GFF2926	0.46	+0.4
10,522	+		GFF2926	0.46	-0.3
10,523	-		GFF2926	0.46	+0.6
10,523	-		GFF2926	0.46	-0.3
10,523	-		GFF2926	0.46	-0.6
10,523	-		GFF2926	0.46	-0.4
10,523	-		GFF2926	0.46	-0.4
10,642	+		GFF2926	0.55	-0.4
10,642	+		GFF2926	0.55	+1.6
10,643	-		GFF2926	0.55	+0.2
10,643	-		GFF2926	0.55	-0.1
10,643	-		GFF2926	0.55	-0.3
10,643	-		GFF2926	0.55	-1.0
10,763	-		GFF2926	0.65	-0.4
10,780	+		GFF2926	0.66	+0.3
10,780	+		GFF2926	0.66	+0.8
10,781	-		GFF2926	0.66	+0.4
10,816	+		GFF2926	0.69	-0.1
10,816	+		GFF2926	0.69	-2.6
10,816	+		GFF2926	0.69	+0.1
10,817	-		GFF2926	0.69	-0.2
10,817	-		GFF2926	0.69	-1.4
10,817	-		GFF2926	0.69	-0.7
10,853	-		GFF2926	0.72	+0.8
10,865	-		GFF2926	0.73	+0.8
10,888	+		GFF2926	0.74	-0.3
10,888	+		GFF2926	0.74	-0.1
10,888	+		GFF2926	0.74	-0.0
10,888	+		GFF2926	0.74	+1.0
10,888	+		GFF2926	0.74	+1.3
10,888	+		GFF2926	0.74	-1.2
10,888	+		GFF2926	0.74	+0.2
10,889	-		GFF2926	0.75	+0.2
10,889	-		GFF2926	0.75	-0.2
10,889	-		GFF2926	0.75	-0.1
10,889	-		GFF2926	0.75	-0.3
10,889	-		GFF2926	0.75	-0.7
10,889	-		GFF2926	0.75	+0.3
10,889	-		GFF2926	0.75	+0.0
10,889	-		GFF2926	0.75	-1.7
10,999	+		GFF2926	0.83	-1.7
10,999	+		GFF2926	0.83	-0.4
10,999	+		GFF2926	0.83	-1.4
10,999	+		GFF2926	0.83	-0.4
10,999	+		GFF2926	0.83	-0.2
10,999	+		GFF2926	0.83	+0.6
10,999	+		GFF2926	0.83	+0.2
10,999	+		GFF2926	0.83	-0.5
10,999	+		GFF2926	0.83	-0.6
11,000	-		GFF2926	0.83	-0.6
11,000	-		GFF2926	0.83	-1.1
11,000	-		GFF2926	0.83	-0.1
11,000	-		GFF2926	0.83	-1.6
11,000	-		GFF2926	0.83	-1.3
11,000	-		GFF2926	0.83	-0.2
11,000	-		GFF2926	0.83	-0.0
11,000	-		GFF2926	0.83	+0.8
11,002	+		GFF2926	0.83	-0.6
11,003	-		GFF2926	0.84	-0.0
11,003	-		GFF2926	0.84	+2.0
11,003	-		GFF2926	0.84	-0.7
11,003	-		GFF2926	0.84	-0.2
11,003	-		GFF2926	0.84	-2.0
11,003	-		GFF2926	0.84	+0.1
11,003	-		GFF2926	0.84	-0.7
11,184	+				+0.1
11,184	+				+0.7
11,184	+				-0.7
11,184	+				-1.2
11,184	+				-0.0
11,184	+				-0.0
11,184	+				-1.6
11,184	+				-0.3
11,185	-				-0.3
11,185	-				-1.4
11,192	+				-0.1
11,193	-				-0.0
11,193	-				-0.2
11,766	+		GFF2927	0.85	-0.4
11,767	-		GFF2927	0.85	+0.8
11,767	-		GFF2927	0.85	-2.1
11,783	-		GFF2927	0.88	+0.3
11,963	+				+0.0
11,963	+				+1.6
11,963	+				+0.8
11,963	+				-0.2
11,963	+				-0.1
11,963	+				-0.7
11,964	-				+0.4
12,068	+		GFF2928	0.13	-1.2
12,068	+		GFF2928	0.13	-0.2
12,069	-		GFF2928	0.13	+0.1
12,069	-		GFF2928	0.13	-0.1
12,069	-		GFF2928	0.13	-0.1