Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2919

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
5,617	+				-0.6
5,618	-				-1.0
5,618	-				+0.2
5,715	+				-0.2
5,715	+				+0.3
5,715	+				-0.1
5,715	+				+0.1
5,715	+				+1.0
5,715	+				+0.0
5,715	+				+0.2
5,715	+				-0.2
5,716	-				+0.9
5,716	-				+0.0
5,716	-				-0.3
5,716	-				+0.7
5,716	-				+0.4
6,069	+		GFF2919	0.79	+0.3
6,069	+		GFF2919	0.79	+0.6
6,070	-		GFF2919	0.79	+0.2
6,070	-		GFF2919	0.79	-0.3
6,073	-		GFF2919	0.79	-1.8
6,265	+				-0.9
6,265	+				-1.2
6,265	+				+0.2
6,265	+				-0.0
6,265	+				-0.2
6,266	-				+0.6
6,266	-				+0.2
6,292	+				-0.7
6,292	+				+0.2
6,292	+				+0.0
6,292	+				+0.6
6,292	+				-1.8
6,292	+				+0.1
6,292	+				-0.4
6,292	+				+0.7
6,292	+				+0.2
6,292	+				-0.6
6,292	+				-0.3
6,292	+				-0.3
6,292	+				-0.1
6,292	+				-0.1
6,292	+				+0.6
6,292	+				-1.2
6,292	+				+0.3
6,293	-				+0.3
6,293	-				-0.0
6,293	-				-0.3
6,293	-				-0.1
6,293	-				+0.1
6,293	-				-0.3
6,293	-				+0.7
6,293	-				-0.7
6,293	-				+0.2
6,293	-				+0.3
6,293	-				+0.4
6,293	-				+0.7
6,293	-				+0.6
6,293	-				-0.2
6,293	-				-1.6
6,293	-				+0.3
6,296	-		GFF2920	0.10	-0.0
6,296	-		GFF2920	0.10	-0.4
6,328	+		GFF2920	0.17	+0.1
6,328	+		GFF2920	0.17	+2.1
6,329	-		GFF2920	0.17	+0.6
6,382	+		GFF2920	0.29	-0.3
6,382	+		GFF2920	0.29	+0.2
6,382	+		GFF2920	0.29	+0.4
6,382	+		GFF2920	0.29	+0.5
6,383	-		GFF2920	0.29	-0.1
6,383	-		GFF2920	0.29	+0.9
6,505	+		GFF2920	0.54	+1.6
6,505	+		GFF2920	0.54	+0.4
6,505	+		GFF2920	0.54	+0.6
6,505	+		GFF2920	0.54	-0.3
6,505	+		GFF2920	0.54	-0.1
6,505	+		GFF2920	0.54	+0.7
6,505	+		GFF2920	0.54	+0.2
6,505	+		GFF2920	0.54	+0.4
6,505	+		GFF2920	0.54	+0.4
6,505	+		GFF2920	0.54	+0.1
6,506	-		GFF2920	0.55	+0.5
6,506	-		GFF2920	0.55	+0.6
6,506	-		GFF2920	0.55	+1.3
6,506	-		GFF2920	0.55	+0.2
6,506	-		GFF2920	0.55	+0.7
6,506	-		GFF2920	0.55	+0.3
6,506	-		GFF2920	0.55	-1.4
6,506	-		GFF2920	0.55	+0.1
6,506	-		GFF2920	0.55	+0.2
6,506	-		GFF2920	0.55	+0.1
6,583	+		GFF2920	0.71	+1.0
6,583	+		GFF2920	0.71	-0.0
6,583	+		GFF2920	0.71	-0.1
6,583	+		GFF2920	0.71	+0.4
6,583	+		GFF2920	0.71	-0.0
6,584	-		GFF2920	0.71	-0.4
6,584	-		GFF2920	0.71	-0.2
6,584	-		GFF2920	0.71	+0.5
6,655	+		GFF2920	0.86	+1.0
6,655	+		GFF2920	0.86	+0.3
6,656	-		GFF2920	0.86	+0.3
6,656	-		GFF2920	0.86	+0.2
6,794	+				-0.8
6,794	+				-0.0
6,794	+				+0.3
6,794	+				+0.6
6,795	-				-1.0
6,795	-				-0.8
6,795	-				+0.4
6,796	+				-0.2
6,796	+				+0.5
6,796	+				-0.0
6,796	+				-0.1
6,796	+				+0.1
6,796	+				+0.1
6,796	+				+0.9
6,796	+				-0.2
6,796	+				-0.2
6,796	+				+0.6
6,796	+				+0.4
6,796	+				+1.0
6,796	+				-0.5
6,796	+				-0.3
6,796	+				-0.9
6,796	+				-0.2
6,796	+				+0.1
6,796	+				+0.1
6,796	+				+0.7
6,796	+				-0.2
6,796	+				+0.9
6,796	+				-0.7
6,796	+				-1.0
6,797	-				+1.0
6,797	-				+0.2
6,797	-				+1.0
6,797	-				+0.3
6,797	-				-0.6
6,797	-				-0.3
6,797	-				-0.4
6,797	-				+0.0
6,797	-				+0.2
6,797	-				-0.2
6,797	-				+0.1
6,797	-				-0.4
6,797	-				-0.7
6,994	+		GFF2921	0.26	-0.0
6,994	+		GFF2921	0.26	+0.9
6,994	+		GFF2921	0.26	+0.2
6,994	+		GFF2921	0.26	-0.6
6,994	+		GFF2921	0.26	+0.3
6,994	+		GFF2921	0.26	-0.1
6,994	+		GFF2921	0.26	-0.1
6,994	+		GFF2921	0.26	+0.3
6,995	-		GFF2921	0.26	+0.3
6,995	-		GFF2921	0.26	+0.1
6,995	-		GFF2921	0.26	+0.2
6,995	-		GFF2921	0.26	-0.6
6,995	-		GFF2921	0.26	+0.1
6,995	-		GFF2921	0.26	+1.1
6,995	-		GFF2921	0.26	+0.1
6,997	+		GFF2921	0.27	-0.5
6,998	-		GFF2921	0.27	+0.1
7,063	+		GFF2921	0.36	-1.7
7,064	-		GFF2921	0.37	+1.0