Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2805 and GFF2806 are separated by 147 nucleotides GFF2806 and GFF2807 are separated by 22 nucleotides
GFF2804 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 403,315 to 403,821
GFF2804
GFF2805 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 403,818 to 404,672
GFF2805
GFF2806 - Pyrroline-5-carboxylate reductase (EC 1.5.1.2), at 404,820 to 405,650
GFF2806
GFF2807 - Glycerol kinase (EC 2.7.1.30), at 405,673 to 407,166
GFF2807
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.814 kb on + strand at 404.815 kb on - strand at 404.815 kb on - strand at 404.821 kb on + strand at 404.930 kb on - strand, within GFF2806 at 405.097 kb on + strand, within GFF2806 at 405.107 kb on - strand, within GFF2806 at 405.722 kb on + strand at 405.803 kb on + strand at 405.803 kb on - strand at 406.112 kb on + strand, within GFF2807 at 406.382 kb on + strand, within GFF2807 at 406.382 kb on + strand, within GFF2807
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 404,814 + -0.2 404,814 + +2.5 404,814 + -0.2 404,814 + +0.2 404,815 - -0.2 404,815 - -0.2 404,821 + +0.4 404,930 - GFF2806 0.13 -1.3 405,097 + GFF2806 0.33 -3.8 405,107 - GFF2806 0.35 -1.1 405,722 + +1.1 405,803 + +0.6 405,803 - +0.8 406,112 + GFF2807 0.29 +0.8 406,382 + GFF2807 0.47 +0.4 406,382 + GFF2807 0.47 +0.7
Or see this region's nucleotide sequence