Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2607

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2606 and GFF2607 are separated by 200 nucleotidesGFF2607 and GFF2608 are separated by 76 nucleotidesGFF2608 and GFF2609 are separated by 6 nucleotides GFF2606 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 197,221 to 198,645 GFF2606 GFF2607 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 198,846 to 200,534 GFF2607 GFF2608 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 200,611 to 201,363 GFF2608 GFF2609 - Magnesium and cobalt transport protein CorA, at 201,370 to 202,356 GFF2609 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -2 -1 0 1at 197.923 kb on + strand, within GFF2606at 197.923 kb on + strand, within GFF2606at 197.923 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.022 kb on + strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.023 kb on - strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.280 kb on + strand, within GFF2606at 198.281 kb on - strand, within GFF2606at 198.281 kb on - strand, within GFF2606at 198.352 kb on + strand, within GFF2606at 198.352 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.472 kb on + strand, within GFF2606at 198.473 kb on - strand, within GFF2606at 198.473 kb on - strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.496 kb on + strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.497 kb on - strand, within GFF2606at 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.571 kb on + strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.572 kb on - strandat 198.712 kb on + strandat 198.740 kb on + strandat 198.740 kb on + strandat 198.741 kb on - strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.820 kb on + strandat 198.821 kb on - strandat 198.821 kb on - strandat 198.821 kb on - strandat 198.885 kb on + strandat 198.924 kb on + strandat 198.925 kb on - strandat 198.985 kb on - strandat 199.050 kb on + strand, within GFF2607at 199.117 kb on - strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.353 kb on + strand, within GFF2607at 199.354 kb on - strand, within GFF2607at 199.354 kb on - strand, within GFF2607at 199.494 kb on + strand, within GFF2607at 199.495 kb on - strand, within GFF2607at 199.939 kb on - strand, within GFF2607at 199.995 kb on + strand, within GFF2607at 199.995 kb on + strand, within GFF2607at 199.995 kb on + strand, within GFF2607at 200.418 kb on + strandat 200.443 kb on - strandat 200.443 kb on - strandat 200.910 kb on + strand, within GFF2608at 200.911 kb on - strand, within GFF2608at 200.911 kb on - strand, within GFF2608at 200.911 kb on - strand, within GFF2608at 201.323 kb on - strandat 201.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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197,923 + GFF2606 0.49 -0.5
197,923 + GFF2606 0.49 -0.5
197,923 + GFF2606 0.49 -0.2
198,022 + GFF2606 0.56 +0.0
198,022 + GFF2606 0.56 -2.0
198,022 + GFF2606 0.56 +0.3
198,022 + GFF2606 0.56 -0.1
198,023 - GFF2606 0.56 -0.5
198,023 - GFF2606 0.56 +0.5
198,023 - GFF2606 0.56 +0.4
198,280 + GFF2606 0.74 +0.9
198,280 + GFF2606 0.74 +1.0
198,280 + GFF2606 0.74 +0.2
198,281 - GFF2606 0.74 -0.8
198,281 - GFF2606 0.74 +0.8
198,352 + GFF2606 0.79 -1.2
198,352 + GFF2606 0.79 -0.2
198,472 + GFF2606 0.88 -0.2
198,472 + GFF2606 0.88 -0.3
198,472 + GFF2606 0.88 -0.3
198,472 + GFF2606 0.88 -0.3
198,472 + GFF2606 0.88 -0.3
198,472 + GFF2606 0.88 -1.0
198,472 + GFF2606 0.88 -0.2
198,472 + GFF2606 0.88 -0.2
198,473 - GFF2606 0.88 +0.6
198,473 - GFF2606 0.88 -0.8
198,496 + GFF2606 0.89 +0.1
198,496 + GFF2606 0.89 -0.6
198,496 + GFF2606 0.89 -0.0
198,497 - GFF2606 0.90 +0.2
198,497 - GFF2606 0.90 -0.3
198,497 - GFF2606 0.90 +0.2
198,497 - GFF2606 0.90 +0.5
198,497 - GFF2606 0.90 -1.4
198,497 - GFF2606 0.90 +0.1
198,497 - GFF2606 0.90 +0.4
198,571 + -0.3
198,571 + -0.6
198,571 + -1.1
198,571 + -0.6
198,572 - +0.9
198,572 - -1.3
198,572 - +0.8
198,712 + +0.2
198,740 + +0.6
198,740 + +1.0
198,741 - +1.6
198,820 + +0.7
198,820 + +0.3
198,820 + +0.4
198,820 + +0.6
198,821 - -0.6
198,821 - +0.0
198,821 - -0.1
198,885 + -0.6
198,924 + -0.6
198,925 - -1.0
198,985 - -0.3
199,050 + GFF2607 0.12 -0.4
199,117 - GFF2607 0.16 -1.3
199,353 + GFF2607 0.30 +0.1
199,353 + GFF2607 0.30 -0.5
199,353 + GFF2607 0.30 -0.6
199,353 + GFF2607 0.30 -1.2
199,354 - GFF2607 0.30 -0.3
199,354 - GFF2607 0.30 +1.5
199,494 + GFF2607 0.38 +0.3
199,495 - GFF2607 0.38 -0.6
199,939 - GFF2607 0.65 -0.5
199,995 + GFF2607 0.68 -0.3
199,995 + GFF2607 0.68 -0.7
199,995 + GFF2607 0.68 -0.3
200,418 + +1.0
200,443 - +0.9
200,443 - +0.0
200,910 + GFF2608 0.40 -0.0
200,911 - GFF2608 0.40 +0.5
200,911 - GFF2608 0.40 -0.4
200,911 - GFF2608 0.40 -0.2
201,323 - -0.0
201,323 - -0.4

Or see this region's nucleotide sequence