Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF255

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF252 and GFF253 are separated by 12 nucleotidesGFF253 and GFF254 are separated by 293 nucleotidesGFF254 and GFF255 are separated by 24 nucleotidesGFF255 and GFF256 are separated by 14 nucleotidesGFF256 and GFF257 are separated by 133 nucleotides GFF252 - Sulfide dehydrogenase [flavocytochrome C] flavoprotein chain precursor (EC 1.8.2.-), at 268,780 to 270,057 GFF252 GFF253 - cytochrome c subunit of flavocytochrome c sulfide dehydrogenase, at 270,070 to 270,372 GFF253 GFF254 - hypothetical protein, at 270,666 to 270,878 GFF254 GFF255 - MFS permease, at 270,903 to 272,153 GFF255 GFF256 - hypothetical protein, at 272,168 to 272,389 GFF256 GFF257 - Sulfur oxidation molybdopterin C protein, at 272,523 to 273,866 GFF257 Position (kb) 270 271 272 273Strain fitness (log2 ratio) -2 -1 0 1 2at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.912 kb on + strand, within GFF252at 269.913 kb on - strand, within GFF252at 269.936 kb on + strandat 269.936 kb on + strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.072 kb on - strandat 270.125 kb on + strand, within GFF253at 270.125 kb on + strand, within GFF253at 270.126 kb on - strand, within GFF253at 270.400 kb on + strandat 270.400 kb on + strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.401 kb on - strandat 270.441 kb on + strandat 270.441 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.445 kb on + strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.446 kb on - strandat 270.465 kb on + strandat 270.465 kb on + strandat 270.466 kb on - strandat 270.466 kb on - strandat 270.479 kb on + strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.480 kb on - strandat 270.517 kb on - strandat 270.528 kb on + strandat 270.528 kb on + strandat 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.694 kb on + strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.695 kb on - strand, within GFF254at 270.758 kb on - strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.817 kb on + strand, within GFF254at 270.818 kb on - strand, within GFF254at 270.818 kb on - strand, within GFF254at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.050 kb on + strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.051 kb on - strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.095 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.449 kb on + strand, within GFF255at 271.450 kb on - strand, within GFF255at 271.659 kb on + strand, within GFF255at 271.830 kb on + strand, within GFF255at 272.299 kb on - strand, within GFF256at 272.299 kb on - strand, within GFF256at 272.299 kb on - strand, within GFF256at 272.319 kb on + strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.320 kb on - strand, within GFF256at 272.321 kb on + strand, within GFF256at 272.341 kb on - strand, within GFF256at 272.341 kb on - strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.361 kb on + strand, within GFF256at 272.362 kb on - strand, within GFF256at 272.362 kb on - strand, within GFF256at 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.387 kb on + strandat 272.388 kb on - strandat 272.388 kb on - strandat 272.388 kb on - strandat 272.441 kb on + strandat 272.441 kb on + strandat 272.467 kb on - strandat 272.467 kb on - strandat 272.467 kb on - strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.468 kb on + strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.469 kb on - strandat 272.772 kb on + strand, within GFF257at 272.773 kb on - strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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269,912 + GFF252 0.89 -0.2
269,912 + GFF252 0.89 -0.6
269,912 + GFF252 0.89 -0.4
269,912 + GFF252 0.89 -0.4
269,912 + GFF252 0.89 -0.3
269,912 + GFF252 0.89 -0.6
269,912 + GFF252 0.89 +0.1
269,913 - GFF252 0.89 +0.2
269,936 + -0.7
269,936 + -0.2
270,072 - -1.0
270,072 - -1.2
270,072 - -0.5
270,072 - -0.2
270,072 - -0.4
270,125 + GFF253 0.18 -0.8
270,125 + GFF253 0.18 -1.0
270,126 - GFF253 0.18 -0.2
270,400 + -0.5
270,400 + -0.0
270,401 - -1.2
270,401 - +0.5
270,401 - -0.7
270,401 - +0.6
270,441 + -0.6
270,441 + -0.5
270,445 + -1.1
270,445 + -0.1
270,445 + -0.6
270,446 - +0.3
270,446 - -0.2
270,446 - -0.8
270,446 - +0.7
270,446 - -0.1
270,465 + -0.0
270,465 + -0.0
270,466 - -0.3
270,466 - -0.4
270,479 + -0.4
270,480 - +0.8
270,480 - +0.1
270,480 - -0.2
270,480 - -0.5
270,517 - +0.2
270,528 + -0.6
270,528 + -0.4
270,694 + GFF254 0.13 -0.2
270,694 + GFF254 0.13 -0.2
270,694 + GFF254 0.13 +0.3
270,694 + GFF254 0.13 +0.0
270,694 + GFF254 0.13 -0.7
270,694 + GFF254 0.13 -0.9
270,694 + GFF254 0.13 +0.3
270,695 - GFF254 0.14 -0.5
270,695 - GFF254 0.14 -0.2
270,695 - GFF254 0.14 +0.3
270,695 - GFF254 0.14 -0.9
270,695 - GFF254 0.14 +0.4
270,695 - GFF254 0.14 +0.6
270,758 - GFF254 0.43 +1.8
270,817 + GFF254 0.71 +0.1
270,817 + GFF254 0.71 -1.2
270,817 + GFF254 0.71 +0.0
270,818 - GFF254 0.71 +0.1
270,818 - GFF254 0.71 +0.6
271,050 + GFF255 0.12 +0.2
271,050 + GFF255 0.12 +0.1
271,050 + GFF255 0.12 -0.0
271,050 + GFF255 0.12 -0.1
271,050 + GFF255 0.12 -0.3
271,050 + GFF255 0.12 -1.3
271,050 + GFF255 0.12 -0.9
271,050 + GFF255 0.12 +1.4
271,050 + GFF255 0.12 +0.9
271,050 + GFF255 0.12 -0.1
271,050 + GFF255 0.12 -0.0
271,050 + GFF255 0.12 +0.6
271,050 + GFF255 0.12 -0.1
271,051 - GFF255 0.12 -0.2
271,051 - GFF255 0.12 -0.2
271,051 - GFF255 0.12 +0.6
271,051 - GFF255 0.12 -0.1
271,051 - GFF255 0.12 +1.6
271,051 - GFF255 0.12 -1.0
271,051 - GFF255 0.12 -2.2
271,051 - GFF255 0.12 -0.5
271,051 - GFF255 0.12 -0.4
271,095 + GFF255 0.15 +0.3
271,095 + GFF255 0.15 -0.5
271,095 + GFF255 0.15 -0.0
271,095 + GFF255 0.15 -1.1
271,449 + GFF255 0.44 +0.0
271,449 + GFF255 0.44 -0.6
271,449 + GFF255 0.44 -0.1
271,449 + GFF255 0.44 +0.4
271,450 - GFF255 0.44 -0.4
271,659 + GFF255 0.60 -0.2
271,830 + GFF255 0.74 +0.3
272,299 - GFF256 0.59 +0.2
272,299 - GFF256 0.59 -0.4
272,299 - GFF256 0.59 -0.8
272,319 + GFF256 0.68 +1.3
272,320 - GFF256 0.68 +0.4
272,320 - GFF256 0.68 +0.2
272,320 - GFF256 0.68 +0.8
272,321 + GFF256 0.69 -0.5
272,341 - GFF256 0.78 -0.1
272,341 - GFF256 0.78 -0.3
272,361 + GFF256 0.87 -0.1
272,361 + GFF256 0.87 +0.2
272,361 + GFF256 0.87 -0.9
272,361 + GFF256 0.87 +0.7
272,361 + GFF256 0.87 +0.4
272,362 - GFF256 0.87 -0.1
272,362 - GFF256 0.87 -0.4
272,387 + -0.1
272,387 + -0.5
272,387 + +0.5
272,387 + -1.0
272,387 + +0.1
272,387 + -0.2
272,387 + -0.2
272,387 + +1.5
272,387 + -0.4
272,387 + -0.1
272,387 + +0.8
272,388 - -1.0
272,388 - -0.1
272,388 - -0.2
272,441 + +0.3
272,441 + -0.2
272,467 - -0.9
272,467 - -0.3
272,467 - +0.3
272,468 + +1.6
272,468 + -0.4
272,468 + -0.5
272,468 + -0.3
272,468 + -0.3
272,468 + -0.1
272,468 + +0.2
272,469 - -0.2
272,469 - -0.6
272,469 - -1.2
272,469 - +0.9
272,469 - -0.0
272,469 - +1.0
272,772 + GFF257 0.19 -0.0
272,773 - GFF257 0.19 +0.8
273,105 + GFF257 0.43 +0.9
273,105 + GFF257 0.43 -0.3
273,105 + GFF257 0.43 +0.0
273,106 - GFF257 0.43 -0.7
273,106 - GFF257 0.43 +0.2
273,106 - GFF257 0.43 +0.1

Or see this region's nucleotide sequence