Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF222 and GFF223 are separated by 49 nucleotides GFF223 and GFF224 are separated by 21 nucleotides
GFF222 - ATP-dependent RNA helicase Bcep18194_A5658, at 243,279 to 244,769
GFF222
GFF223 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 244,819 to 245,643
GFF223
GFF224 - Magnesium and cobalt efflux protein CorC, at 245,665 to 246,984
GFF224
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2 at 244.275 kb on + strand, within GFF222 at 244.617 kb on + strand, within GFF222 at 245.194 kb on + strand, within GFF223 at 245.195 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.305 kb on + strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.306 kb on - strand, within GFF223 at 245.558 kb on + strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.559 kb on - strand, within GFF223 at 245.645 kb on + strand at 245.645 kb on + strand at 245.646 kb on + strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.646 kb on - strand at 245.664 kb on + strand at 246.005 kb on + strand, within GFF224 at 246.005 kb on + strand, within GFF224 at 246.006 kb on - strand, within GFF224 at 246.601 kb on + strand, within GFF224 at 246.601 kb on + strand, within GFF224
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 244,275 + GFF222 0.67 -0.4 244,617 + GFF222 0.90 +0.1 245,194 + GFF223 0.45 +0.3 245,195 + GFF223 0.46 +0.3 245,305 + GFF223 0.59 -0.3 245,305 + GFF223 0.59 -0.6 245,305 + GFF223 0.59 -0.3 245,306 - GFF223 0.59 -0.1 245,306 - GFF223 0.59 +1.2 245,306 - GFF223 0.59 +2.1 245,306 - GFF223 0.59 -0.0 245,306 - GFF223 0.59 +1.2 245,306 - GFF223 0.59 +0.4 245,558 + GFF223 0.90 +0.1 245,559 - GFF223 0.90 -0.0 245,559 - GFF223 0.90 -0.1 245,559 - GFF223 0.90 -0.4 245,559 - GFF223 0.90 +0.9 245,645 + -1.1 245,645 + -0.5 245,646 + +0.1 245,646 - -0.1 245,646 - +0.8 245,646 - +0.0 245,664 + -1.2 246,005 + GFF224 0.26 -0.8 246,005 + GFF224 0.26 +0.6 246,006 - GFF224 0.26 +0.1 246,601 + GFF224 0.71 -0.0 246,601 + GFF224 0.71 -0.4
Or see this region's nucleotide sequence