Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1952 and GFF1953 are separated by 112 nucleotides GFF1953 and GFF1954 are separated by 25 nucleotides GFF1954 and GFF1955 are separated by 7 nucleotides GFF1955 and GFF1956 are separated by 28 nucleotides
GFF1952 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 825,188 to 826,288
GFF1952
GFF1953 - hypothetical protein, at 826,401 to 826,904
GFF1953
GFF1954 - hypothetical protein, at 826,930 to 827,565
GFF1954
GFF1955 - hypothetical protein, at 827,573 to 828,181
GFF1955
GFF1956 - Inner membrane protein YqiK, at 828,210 to 829,937
GFF1956
Position (kb) 826
827
828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 826.224 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.356 kb on + strand at 826.356 kb on + strand at 826.356 kb on + strand at 826.423 kb on + strand at 826.437 kb on + strand at 826.438 kb on - strand at 826.438 kb on - strand at 826.438 kb on - strand at 826.535 kb on + strand, within GFF1953 at 826.542 kb on + strand, within GFF1953 at 826.649 kb on - strand, within GFF1953 at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 827.431 kb on + strand, within GFF1954 at 827.431 kb on + strand, within GFF1954 at 827.431 kb on + strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.432 kb on - strand, within GFF1954 at 827.563 kb on + strand at 827.563 kb on + strand at 827.564 kb on - strand at 827.564 kb on - strand at 827.802 kb on - strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.059 kb on + strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.060 kb on - strand, within GFF1955 at 828.192 kb on + strand at 828.192 kb on + strand at 828.192 kb on + strand at 828.192 kb on + strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.193 kb on - strand at 828.297 kb on + strand at 828.382 kb on + strand at 828.383 kb on - strand, within GFF1956 at 828.383 kb on - strand, within GFF1956
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 826,224 + -1.8 826,252 + -0.4 826,252 + +2.0 826,252 + +0.6 826,252 + -0.0 826,253 - -0.4 826,253 - -0.5 826,253 - -1.1 826,253 - -0.3 826,253 - -0.2 826,356 + -0.3 826,356 + -0.1 826,356 + -1.1 826,423 + +0.1 826,437 + -1.7 826,438 - -0.3 826,438 - +0.9 826,438 - -0.4 826,535 + GFF1953 0.27 -0.6 826,542 + GFF1953 0.28 -0.4 826,649 - GFF1953 0.49 -0.9 826,967 + +0.0 826,967 + -0.8 826,967 + +0.5 826,967 + +0.3 826,967 + -0.0 826,967 + +0.2 826,967 + +0.4 826,968 - +2.4 826,968 - +0.5 826,968 - -0.0 826,968 - +0.0 826,968 - +0.3 827,431 + GFF1954 0.79 -0.5 827,431 + GFF1954 0.79 +0.1 827,431 + GFF1954 0.79 -0.6 827,432 - GFF1954 0.79 -0.2 827,432 - GFF1954 0.79 +1.0 827,432 - GFF1954 0.79 -1.1 827,563 + -0.5 827,563 + +0.3 827,564 - -0.1 827,564 - +0.5 827,802 - GFF1955 0.38 -0.6 828,059 + GFF1955 0.80 -0.6 828,059 + GFF1955 0.80 +0.3 828,059 + GFF1955 0.80 -0.4 828,059 + GFF1955 0.80 -0.2 828,059 + GFF1955 0.80 -0.3 828,060 - GFF1955 0.80 -0.8 828,060 - GFF1955 0.80 -0.1 828,060 - GFF1955 0.80 -0.1 828,060 - GFF1955 0.80 -0.1 828,060 - GFF1955 0.80 +0.2 828,060 - GFF1955 0.80 -0.2 828,192 + -0.1 828,192 + +0.1 828,192 + +1.2 828,192 + +0.2 828,193 - -0.2 828,193 - +0.1 828,193 - -0.2 828,193 - -0.0 828,297 + -0.8 828,382 + -0.9 828,383 - GFF1956 0.10 -0.6 828,383 - GFF1956 0.10 -2.0
Or see this region's nucleotide sequence