Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1951 and GFF1952 are separated by 215 nucleotides GFF1952 and GFF1953 are separated by 112 nucleotides GFF1953 and GFF1954 are separated by 25 nucleotides
GFF1951 - Integral membrane protein TerC, at 824,025 to 824,972
GFF1951
GFF1952 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 825,188 to 826,288
GFF1952
GFF1953 - hypothetical protein, at 826,401 to 826,904
GFF1953
GFF1954 - hypothetical protein, at 826,930 to 827,565
GFF1954
Position (kb) 825
826
827 Strain fitness (log2 ratio) -2
-1
0
1
2 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.510 kb on + strand, within GFF1951 at 824.536 kb on + strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.537 kb on - strand, within GFF1951 at 824.662 kb on + strand, within GFF1951 at 824.662 kb on + strand, within GFF1951 at 824.663 kb on - strand, within GFF1951 at 824.663 kb on - strand, within GFF1951 at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.068 kb on + strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.069 kb on - strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.124 kb on + strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.125 kb on - strand at 825.149 kb on + strand at 825.149 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on + strand at 825.210 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.211 kb on - strand at 825.216 kb on + strand at 825.216 kb on + strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 825.217 kb on - strand at 826.224 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.252 kb on + strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.253 kb on - strand at 826.356 kb on + strand at 826.356 kb on + strand at 826.356 kb on + strand at 826.423 kb on + strand at 826.437 kb on + strand at 826.438 kb on - strand at 826.438 kb on - strand at 826.438 kb on - strand at 826.535 kb on + strand, within GFF1953 at 826.542 kb on + strand, within GFF1953 at 826.649 kb on - strand, within GFF1953 at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.967 kb on + strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand at 826.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 824,259 + GFF1951 0.25 +0.3 824,259 + GFF1951 0.25 -0.1 824,259 + GFF1951 0.25 +0.2 824,259 + GFF1951 0.25 -1.1 824,260 - GFF1951 0.25 +1.0 824,260 - GFF1951 0.25 +0.1 824,260 - GFF1951 0.25 +1.6 824,260 - GFF1951 0.25 -0.0 824,260 - GFF1951 0.25 -0.1 824,510 + GFF1951 0.51 -0.3 824,536 + GFF1951 0.54 -0.8 824,537 - GFF1951 0.54 +0.2 824,537 - GFF1951 0.54 +0.3 824,537 - GFF1951 0.54 +0.2 824,537 - GFF1951 0.54 -1.2 824,662 + GFF1951 0.67 +0.1 824,662 + GFF1951 0.67 -0.7 824,663 - GFF1951 0.67 -0.6 824,663 - GFF1951 0.67 +0.2 825,068 + -0.4 825,068 + -0.5 825,068 + -0.3 825,068 + +0.1 825,068 + -0.3 825,068 + -0.0 825,068 + +0.0 825,068 + +1.0 825,068 + +0.4 825,068 + +0.6 825,068 + +0.9 825,069 - +0.4 825,069 - +0.3 825,069 - -0.0 825,069 - -0.6 825,069 - +0.8 825,069 - -0.9 825,069 - +0.1 825,124 + -0.2 825,124 + +0.1 825,124 + -0.6 825,124 + +0.3 825,124 + +0.3 825,125 - -0.0 825,125 - -0.5 825,125 - +0.8 825,125 - +0.4 825,149 + +0.1 825,149 + +0.1 825,210 + -0.2 825,210 + -0.1 825,210 + -0.2 825,210 + -0.3 825,210 - -0.3 825,211 - +0.9 825,211 - -0.2 825,211 - +0.1 825,211 - -0.5 825,216 + -0.9 825,216 + -0.2 825,217 - -0.1 825,217 - -0.0 825,217 - -0.2 825,217 - -0.4 825,217 - -1.1 825,217 - -0.3 826,224 + -1.8 826,252 + -0.4 826,252 + +2.0 826,252 + +0.6 826,252 + -0.0 826,253 - -0.4 826,253 - -0.5 826,253 - -1.1 826,253 - -0.3 826,253 - -0.2 826,356 + -0.3 826,356 + -0.1 826,356 + -1.1 826,423 + +0.1 826,437 + -1.7 826,438 - -0.3 826,438 - +0.9 826,438 - -0.4 826,535 + GFF1953 0.27 -0.6 826,542 + GFF1953 0.28 -0.4 826,649 - GFF1953 0.49 -0.9 826,967 + +0.0 826,967 + -0.8 826,967 + +0.5 826,967 + +0.3 826,967 + -0.0 826,967 + +0.2 826,967 + +0.4 826,968 - +2.4 826,968 - +0.5 826,968 - -0.0 826,968 - +0.0 826,968 - +0.3
Or see this region's nucleotide sequence