Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1897

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1896 and GFF1897 are separated by 7 nucleotidesGFF1897 and GFF1898 overlap by 4 nucleotidesGFF1898 and GFF1899 overlap by 4 nucleotides GFF1896 - transcriptional regulator, MerR family, at 761,147 to 762,124 GFF1896 GFF1897 - putative exported protein, at 762,132 to 763,118 GFF1897 GFF1898 - hypothetical protein, at 763,115 to 763,846 GFF1898 GFF1899 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 763,843 to 764,895 GFF1899 Position (kb) 762 763 764Strain fitness (log2 ratio) -1 0 1at 761.246 kb on + strand, within GFF1896at 761.246 kb on + strand, within GFF1896at 761.246 kb on + strand, within GFF1896at 761.247 kb on - strand, within GFF1896at 761.247 kb on - strand, within GFF1896at 761.703 kb on - strand, within GFF1896at 761.703 kb on - strand, within GFF1896at 761.766 kb on - strand, within GFF1896at 762.023 kb on + strand, within GFF1896at 762.023 kb on + strand, within GFF1896at 762.024 kb on - strand, within GFF1896at 762.172 kb on + strandat 762.640 kb on + strand, within GFF1897at 762.640 kb on + strand, within GFF1897at 762.640 kb on + strand, within GFF1897at 762.641 kb on - strand, within GFF1897at 762.778 kb on + strand, within GFF1897at 762.794 kb on - strand, within GFF1897at 762.799 kb on + strand, within GFF1897at 762.799 kb on + strand, within GFF1897at 762.800 kb on - strand, within GFF1897at 762.800 kb on - strand, within GFF1897at 762.800 kb on - strand, within GFF1897at 763.507 kb on - strand, within GFF1898at 763.662 kb on + strand, within GFF1898at 763.662 kb on + strand, within GFF1898at 764.028 kb on - strand, within GFF1899at 764.028 kb on - strand, within GFF1899

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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761,246 + GFF1896 0.10 -0.7
761,246 + GFF1896 0.10 +0.4
761,246 + GFF1896 0.10 +0.2
761,247 - GFF1896 0.10 +0.4
761,247 - GFF1896 0.10 +1.0
761,703 - GFF1896 0.57 +0.7
761,703 - GFF1896 0.57 +0.2
761,766 - GFF1896 0.63 -0.0
762,023 + GFF1896 0.90 +0.1
762,023 + GFF1896 0.90 -0.3
762,024 - GFF1896 0.90 -0.1
762,172 + +0.3
762,640 + GFF1897 0.51 -0.4
762,640 + GFF1897 0.51 +0.6
762,640 + GFF1897 0.51 -0.0
762,641 - GFF1897 0.52 +1.0
762,778 + GFF1897 0.65 +0.1
762,794 - GFF1897 0.67 -0.4
762,799 + GFF1897 0.68 +0.2
762,799 + GFF1897 0.68 +0.0
762,800 - GFF1897 0.68 -0.8
762,800 - GFF1897 0.68 +0.1
762,800 - GFF1897 0.68 +1.4
763,507 - GFF1898 0.54 -0.6
763,662 + GFF1898 0.75 -0.8
763,662 + GFF1898 0.75 +0.6
764,028 - GFF1899 0.18 -0.3
764,028 - GFF1899 0.18 +0.3

Or see this region's nucleotide sequence