Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1880

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1879 and GFF1880 are separated by 18 nucleotidesGFF1880 and GFF1881 are separated by 15 nucleotidesGFF1881 and GFF1882 are separated by 10 nucleotides GFF1879 - TRAP-type C4-dicarboxylate transport system, large permease component, at 742,666 to 743,967 GFF1879 GFF1880 - Putative threonine efflux protein, at 743,986 to 744,621 GFF1880 GFF1881 - Exodeoxyribonuclease III (EC 3.1.11.2), at 744,637 to 745,428 GFF1881 GFF1882 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 745,439 to 746,155 GFF1882 Position (kb) 743 744 745Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 743.048 kb on - strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.242 kb on + strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.243 kb on - strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.254 kb on + strand, within GFF1879at 743.255 kb on - strand, within GFF1879at 743.255 kb on - strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.545 kb on + strand, within GFF1879at 743.546 kb on - strand, within GFF1879at 743.869 kb on + strandat 743.887 kb on + strandat 743.888 kb on - strandat 743.923 kb on + strandat 743.923 kb on + strandat 743.923 kb on + strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 743.924 kb on - strandat 744.170 kb on + strand, within GFF1880at 744.171 kb on - strand, within GFF1880at 744.171 kb on - strand, within GFF1880at 744.356 kb on + strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.357 kb on - strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.374 kb on + strand, within GFF1880at 744.375 kb on - strand, within GFF1880at 744.375 kb on - strand, within GFF1880at 744.593 kb on + strandat 744.594 kb on - strandat 744.594 kb on - strandat 744.653 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.698 kb on + strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.699 kb on - strandat 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.749 kb on + strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.750 kb on - strand, within GFF1881at 744.779 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.809 kb on + strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.810 kb on - strand, within GFF1881at 744.845 kb on + strand, within GFF1881at 744.846 kb on - strand, within GFF1881at 744.846 kb on - strand, within GFF1881at 745.025 kb on + strand, within GFF1881at 745.026 kb on - strand, within GFF1881at 745.046 kb on + strand, within GFF1881at 745.046 kb on + strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.047 kb on - strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.091 kb on + strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.092 kb on - strand, within GFF1881at 745.178 kb on + strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.215 kb on - strand, within GFF1881at 745.232 kb on + strand, within GFF1881at 745.232 kb on + strand, within GFF1881at 745.233 kb on - strand, within GFF1881at 745.233 kb on - strand, within GFF1881at 745.250 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.335 kb on + strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.336 kb on - strand, within GFF1881at 745.450 kb on + strandat 745.450 kb on + strandat 745.450 kb on + strandat 745.451 kb on - strandat 745.451 kb on - strandat 745.575 kb on - strand, within GFF1882at 745.575 kb on - strand, within GFF1882

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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743,048 - GFF1879 0.29 -1.2
743,242 + GFF1879 0.44 +0.3
743,242 + GFF1879 0.44 +0.0
743,242 + GFF1879 0.44 +1.2
743,242 + GFF1879 0.44 +0.4
743,242 + GFF1879 0.44 +0.3
743,243 - GFF1879 0.44 -0.3
743,243 - GFF1879 0.44 -0.7
743,243 - GFF1879 0.44 +0.5
743,243 - GFF1879 0.44 +0.3
743,243 - GFF1879 0.44 -0.0
743,243 - GFF1879 0.44 -0.0
743,243 - GFF1879 0.44 +1.6
743,254 + GFF1879 0.45 +0.8
743,254 + GFF1879 0.45 +0.8
743,254 + GFF1879 0.45 -0.1
743,255 - GFF1879 0.45 -0.7
743,255 - GFF1879 0.45 -0.5
743,545 + GFF1879 0.68 -0.1
743,545 + GFF1879 0.68 -0.0
743,545 + GFF1879 0.68 +0.1
743,545 + GFF1879 0.68 -0.7
743,545 + GFF1879 0.68 +0.2
743,545 + GFF1879 0.68 +0.8
743,546 - GFF1879 0.68 +0.0
743,869 + +0.6
743,887 + +0.2
743,888 - +0.2
743,923 + +0.6
743,923 + +0.4
743,923 + -0.4
743,924 - -0.2
743,924 - -0.1
743,924 - -0.4
743,924 - -0.8
743,924 - -0.7
743,924 - -0.2
743,924 - +0.2
743,924 - -0.2
743,924 - +2.9
743,924 - +0.0
743,924 - -0.6
744,170 + GFF1880 0.29 +0.6
744,171 - GFF1880 0.29 -0.4
744,171 - GFF1880 0.29 -0.5
744,356 + GFF1880 0.58 +1.6
744,357 - GFF1880 0.58 +0.6
744,357 - GFF1880 0.58 +0.8
744,357 - GFF1880 0.58 -0.1
744,374 + GFF1880 0.61 -0.5
744,374 + GFF1880 0.61 +0.1
744,374 + GFF1880 0.61 -0.6
744,375 - GFF1880 0.61 +0.1
744,375 - GFF1880 0.61 +0.0
744,593 + +0.8
744,594 - -0.4
744,594 - +1.2
744,653 + +0.5
744,698 + -0.0
744,698 + -0.3
744,698 + +0.3
744,698 + -0.5
744,699 - -0.8
744,699 - +0.2
744,699 - +1.9
744,699 - +1.2
744,699 - +0.4
744,699 - -0.0
744,699 - -0.2
744,749 + GFF1881 0.14 -0.0
744,749 + GFF1881 0.14 +1.2
744,749 + GFF1881 0.14 -1.2
744,749 + GFF1881 0.14 -0.5
744,749 + GFF1881 0.14 +0.7
744,749 + GFF1881 0.14 -0.3
744,750 - GFF1881 0.14 -0.0
744,750 - GFF1881 0.14 +0.2
744,750 - GFF1881 0.14 -1.6
744,750 - GFF1881 0.14 -0.1
744,779 + GFF1881 0.18 +1.0
744,809 + GFF1881 0.22 +0.3
744,809 + GFF1881 0.22 +0.1
744,809 + GFF1881 0.22 -0.2
744,810 - GFF1881 0.22 -0.5
744,810 - GFF1881 0.22 -0.9
744,810 - GFF1881 0.22 -0.4
744,845 + GFF1881 0.26 -0.2
744,846 - GFF1881 0.26 +1.1
744,846 - GFF1881 0.26 +0.1
745,025 + GFF1881 0.49 +0.9
745,026 - GFF1881 0.49 -0.4
745,046 + GFF1881 0.52 +0.1
745,046 + GFF1881 0.52 -0.3
745,047 - GFF1881 0.52 -1.0
745,047 - GFF1881 0.52 -0.2
745,047 - GFF1881 0.52 +0.6
745,091 + GFF1881 0.57 +1.0
745,091 + GFF1881 0.57 -1.0
745,091 + GFF1881 0.57 -2.0
745,092 - GFF1881 0.57 +0.0
745,092 - GFF1881 0.57 -0.3
745,092 - GFF1881 0.57 -0.0
745,092 - GFF1881 0.57 +0.4
745,178 + GFF1881 0.68 -1.9
745,215 - GFF1881 0.73 -0.5
745,215 - GFF1881 0.73 +0.5
745,215 - GFF1881 0.73 -1.1
745,232 + GFF1881 0.75 +0.2
745,232 + GFF1881 0.75 -0.0
745,233 - GFF1881 0.75 -0.4
745,233 - GFF1881 0.75 +0.3
745,250 + GFF1881 0.77 +0.2
745,335 + GFF1881 0.88 +0.4
745,335 + GFF1881 0.88 +0.6
745,335 + GFF1881 0.88 -0.5
745,335 + GFF1881 0.88 +0.7
745,335 + GFF1881 0.88 -0.4
745,335 + GFF1881 0.88 +0.3
745,335 + GFF1881 0.88 +0.0
745,335 + GFF1881 0.88 +0.2
745,336 - GFF1881 0.88 +0.4
745,336 - GFF1881 0.88 +0.2
745,336 - GFF1881 0.88 +0.7
745,336 - GFF1881 0.88 +0.7
745,336 - GFF1881 0.88 +0.0
745,450 + -1.4
745,450 + -3.2
745,450 + -1.8
745,451 - -1.7
745,451 - -1.0
745,575 - GFF1882 0.19 -3.2
745,575 - GFF1882 0.19 -1.8

Or see this region's nucleotide sequence