Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1868 and GFF1869 are separated by 3 nucleotides GFF1869 and GFF1870 overlap by 10 nucleotides GFF1870 and GFF1871 are separated by 2 nucleotides
GFF1868 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 732,309 to 733,838
GFF1868
GFF1869 - AmpG permease, at 733,842 to 735,257
GFF1869
GFF1870 - Zn-dependent protease with chaperone function, at 735,248 to 736,153
GFF1870
GFF1871 - Hypothetical metal-binding enzyme, YcbL homolog, at 736,156 to 736,794
GFF1871
Position (kb) 733
734
735
736 Strain fitness (log2 ratio) -2
-1
0
1 at 733.239 kb on + strand, within GFF1868 at 733.239 kb on + strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.740 kb on + strand at 733.741 kb on - strand at 733.945 kb on + strand at 733.945 kb on + strand at 734.317 kb on + strand, within GFF1869 at 734.332 kb on + strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.570 kb on - strand, within GFF1869 at 734.596 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.986 kb on + strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 734.987 kb on - strand, within GFF1869 at 735.136 kb on + strand at 735.137 kb on - strand at 735.235 kb on - strand at 735.235 kb on - strand at 735.275 kb on + strand at 735.275 kb on + strand at 735.276 kb on - strand at 735.278 kb on + strand at 735.278 kb on + strand at 735.279 kb on - strand at 735.279 kb on - strand at 735.497 kb on + strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.498 kb on - strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.707 kb on + strand, within GFF1870 at 735.708 kb on - strand, within GFF1870 at 736.130 kb on + strand at 736.130 kb on + strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.172 kb on + strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 733,239 + GFF1868 0.61 +0.6 733,239 + GFF1868 0.61 +1.1 733,240 - GFF1868 0.61 +0.6 733,240 - GFF1868 0.61 +0.6 733,240 - GFF1868 0.61 +0.6 733,506 + GFF1868 0.78 +1.1 733,506 + GFF1868 0.78 +1.2 733,506 + GFF1868 0.78 +0.7 733,507 - GFF1868 0.78 +0.8 733,507 - GFF1868 0.78 +0.0 733,507 - GFF1868 0.78 -0.1 733,507 - GFF1868 0.78 +1.1 733,560 + GFF1868 0.82 +0.8 733,560 + GFF1868 0.82 -0.4 733,560 + GFF1868 0.82 +0.4 733,560 + GFF1868 0.82 +1.6 733,561 - GFF1868 0.82 +0.0 733,561 - GFF1868 0.82 +0.8 733,561 - GFF1868 0.82 +0.8 733,740 + +0.8 733,741 - -0.6 733,945 + -0.3 733,945 + -0.4 734,317 + GFF1869 0.34 -1.0 734,332 + GFF1869 0.35 +0.2 734,333 - GFF1869 0.35 -0.2 734,333 - GFF1869 0.35 -0.4 734,333 - GFF1869 0.35 +0.3 734,333 - GFF1869 0.35 -0.6 734,570 - GFF1869 0.51 -1.3 734,596 + GFF1869 0.53 +0.1 734,707 + GFF1869 0.61 -0.8 734,707 + GFF1869 0.61 +0.6 734,708 - GFF1869 0.61 -0.3 734,708 - GFF1869 0.61 -1.3 734,708 - GFF1869 0.61 +0.0 734,986 + GFF1869 0.81 -0.6 734,987 - GFF1869 0.81 -0.3 734,987 - GFF1869 0.81 +1.0 734,987 - GFF1869 0.81 -1.0 735,136 + -0.5 735,137 - -1.0 735,235 - -2.0 735,235 - -0.1 735,275 + -0.4 735,275 + +0.9 735,276 - +0.3 735,278 + -0.9 735,278 + -0.4 735,279 - +0.1 735,279 - +0.3 735,497 + GFF1870 0.27 +0.4 735,498 - GFF1870 0.28 -0.3 735,498 - GFF1870 0.28 -1.4 735,707 + GFF1870 0.51 -0.1 735,707 + GFF1870 0.51 -0.4 735,707 + GFF1870 0.51 -0.1 735,708 - GFF1870 0.51 +0.0 736,130 + -0.2 736,130 + +0.2 736,131 - -0.7 736,131 - -0.2 736,131 - -0.9 736,172 + +0.5 736,173 - -0.7 736,173 - +0.7 736,173 - +0.1
Or see this region's nucleotide sequence