Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1777 and GFF1778 are separated by 99 nucleotides GFF1778 and GFF1779 overlap by 4 nucleotides GFF1779 and GFF1780 are separated by 12 nucleotides GFF1780 and GFF1781 overlap by 1 nucleotides
GFF1777 - Auxin Efflux Carrier, at 641,533 to 642,495
GFF1777
GFF1778 - ATP-dependent DNA helicase Rep, at 642,595 to 644,673
GFF1778
GFF1779 - hypothetical protein, at 644,670 to 645,167
GFF1779
GFF1780 - hypothetical protein, at 645,180 to 645,431
GFF1780
GFF1781 - TRAP-type C4-dicarboxylate transport system, large permease component, at 645,431 to 646,714
GFF1781
Position (kb) 642
643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 641.795 kb on + strand, within GFF1777 at 641.796 kb on - strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.290 kb on + strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.291 kb on - strand, within GFF1777 at 642.351 kb on - strand, within GFF1777 at 642.351 kb on - strand, within GFF1777 at 642.354 kb on - strand, within GFF1777 at 642.440 kb on + strand at 642.440 kb on + strand at 642.441 kb on - strand at 642.441 kb on - strand at 642.841 kb on - strand, within GFF1778 at 642.841 kb on - strand, within GFF1778 at 642.961 kb on - strand, within GFF1778 at 643.118 kb on - strand, within GFF1778 at 643.231 kb on + strand, within GFF1778 at 643.231 kb on + strand, within GFF1778 at 643.255 kb on + strand, within GFF1778 at 643.256 kb on - strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.327 kb on + strand, within GFF1778 at 643.328 kb on - strand, within GFF1778 at 643.328 kb on - strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.414 kb on + strand, within GFF1778 at 643.415 kb on - strand, within GFF1778 at 643.633 kb on + strand, within GFF1778 at 643.693 kb on + strand, within GFF1778 at 643.693 kb on + strand, within GFF1778 at 643.693 kb on + strand, within GFF1778 at 643.694 kb on - strand, within GFF1778 at 643.694 kb on - strand, within GFF1778 at 643.870 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.443 kb on + strand, within GFF1778 at 644.444 kb on - strand, within GFF1778 at 644.444 kb on - strand, within GFF1778 at 644.805 kb on + strand, within GFF1779 at 644.806 kb on - strand, within GFF1779 at 644.901 kb on + strand, within GFF1779 at 645.281 kb on - strand, within GFF1780
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 641,795 + GFF1777 0.27 -0.1 641,796 - GFF1777 0.27 -0.1 642,290 + GFF1777 0.79 +0.3 642,290 + GFF1777 0.79 +0.8 642,290 + GFF1777 0.79 +2.5 642,290 + GFF1777 0.79 +1.2 642,291 - GFF1777 0.79 -0.5 642,291 - GFF1777 0.79 -0.8 642,291 - GFF1777 0.79 +1.0 642,351 - GFF1777 0.85 -0.6 642,351 - GFF1777 0.85 +0.1 642,354 - GFF1777 0.85 +0.3 642,440 + -0.1 642,440 + -0.5 642,441 - +0.3 642,441 - -0.5 642,841 - GFF1778 0.12 -1.0 642,841 - GFF1778 0.12 +0.4 642,961 - GFF1778 0.18 +0.1 643,118 - GFF1778 0.25 -0.0 643,231 + GFF1778 0.31 -0.2 643,231 + GFF1778 0.31 -1.2 643,255 + GFF1778 0.32 +0.5 643,256 - GFF1778 0.32 +1.0 643,327 + GFF1778 0.35 +0.5 643,327 + GFF1778 0.35 -1.5 643,327 + GFF1778 0.35 -1.0 643,327 + GFF1778 0.35 -0.4 643,328 - GFF1778 0.35 -0.0 643,328 - GFF1778 0.35 +0.3 643,414 + GFF1778 0.39 -1.9 643,414 + GFF1778 0.39 -0.3 643,414 + GFF1778 0.39 +0.1 643,414 + GFF1778 0.39 +0.7 643,415 - GFF1778 0.39 +0.4 643,633 + GFF1778 0.50 -1.5 643,693 + GFF1778 0.53 -1.6 643,693 + GFF1778 0.53 -0.2 643,693 + GFF1778 0.53 -0.9 643,694 - GFF1778 0.53 -0.8 643,694 - GFF1778 0.53 -0.7 643,870 + GFF1778 0.61 -0.3 644,443 + GFF1778 0.89 +0.7 644,443 + GFF1778 0.89 -0.2 644,443 + GFF1778 0.89 -0.9 644,443 + GFF1778 0.89 -1.5 644,444 - GFF1778 0.89 -0.2 644,444 - GFF1778 0.89 -0.9 644,805 + GFF1779 0.27 +0.9 644,806 - GFF1779 0.27 +0.5 644,901 + GFF1779 0.46 -0.2 645,281 - GFF1780 0.40 -0.3
Or see this region's nucleotide sequence