Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1759

Experiment: Ying_sugar7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1758 and GFF1759 are separated by 149 nucleotidesGFF1759 and GFF1760 are separated by 34 nucleotides GFF1758 - periplasmic sensor signal transduction histidine kinase, at 620,973 to 622,346 GFF1758 GFF1759 - Tricarboxylate transport protein TctB, at 622,496 to 622,981 GFF1759 GFF1760 - Tricarboxylate transport membrane protein TctA, at 623,016 to 624,527 GFF1760 Position (kb) 622 623Strain fitness (log2 ratio) -2 -1 0 1at 621.824 kb on - strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.071 kb on + strand, within GFF1758at 622.072 kb on - strand, within GFF1758at 622.416 kb on + strandat 622.417 kb on - strandat 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.580 kb on + strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.581 kb on - strand, within GFF1759at 622.616 kb on + strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.617 kb on - strand, within GFF1759at 622.760 kb on - strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.829 kb on + strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.830 kb on - strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.919 kb on + strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 622.920 kb on - strand, within GFF1759at 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.079 kb on + strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.080 kb on - strandat 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.172 kb on + strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.173 kb on - strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.217 kb on + strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.218 kb on - strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.220 kb on + strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.221 kb on - strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.232 kb on + strand, within GFF1760at 623.233 kb on - strand, within GFF1760at 623.307 kb on + strand, within GFF1760at 623.454 kb on + strand, within GFF1760at 623.454 kb on + strand, within GFF1760at 623.455 kb on - strand, within GFF1760at 623.455 kb on - strand, within GFF1760at 623.592 kb on + strand, within GFF1760at 623.592 kb on + strand, within GFF1760at 623.662 kb on - strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.853 kb on + strand, within GFF1760at 623.854 kb on - strand, within GFF1760at 623.854 kb on - strand, within GFF1760at 623.854 kb on - strand, within GFF1760

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2
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621,824 - GFF1758 0.62 -0.8
622,071 + GFF1758 0.80 -0.5
622,071 + GFF1758 0.80 -1.7
622,071 + GFF1758 0.80 -1.5
622,071 + GFF1758 0.80 -1.1
622,072 - GFF1758 0.80 -1.1
622,416 + +1.2
622,417 - +0.5
622,580 + GFF1759 0.17 -1.2
622,580 + GFF1759 0.17 -1.7
622,580 + GFF1759 0.17 -0.7
622,580 + GFF1759 0.17 -1.6
622,580 + GFF1759 0.17 -1.4
622,580 + GFF1759 0.17 -1.2
622,581 - GFF1759 0.17 -0.9
622,581 - GFF1759 0.17 -1.1
622,581 - GFF1759 0.17 -1.2
622,581 - GFF1759 0.17 -1.7
622,581 - GFF1759 0.17 -0.8
622,581 - GFF1759 0.17 -0.7
622,581 - GFF1759 0.17 -0.8
622,616 + GFF1759 0.25 -2.1
622,617 - GFF1759 0.25 -1.1
622,617 - GFF1759 0.25 -1.9
622,760 - GFF1759 0.54 -2.2
622,829 + GFF1759 0.69 +0.7
622,829 + GFF1759 0.69 -0.9
622,829 + GFF1759 0.69 -1.5
622,829 + GFF1759 0.69 -1.0
622,829 + GFF1759 0.69 -0.3
622,829 + GFF1759 0.69 +0.7
622,829 + GFF1759 0.69 -0.7
622,829 + GFF1759 0.69 -0.2
622,829 + GFF1759 0.69 -0.6
622,829 + GFF1759 0.69 -0.7
622,830 - GFF1759 0.69 -1.9
622,830 - GFF1759 0.69 -0.8
622,919 + GFF1759 0.87 -1.2
622,919 + GFF1759 0.87 -0.8
622,919 + GFF1759 0.87 -0.7
622,919 + GFF1759 0.87 -0.7
622,919 + GFF1759 0.87 -1.6
622,919 + GFF1759 0.87 -0.8
622,919 + GFF1759 0.87 -0.0
622,919 + GFF1759 0.87 -1.0
622,919 + GFF1759 0.87 -1.6
622,920 - GFF1759 0.87 -1.1
622,920 - GFF1759 0.87 -1.4
622,920 - GFF1759 0.87 -1.3
622,920 - GFF1759 0.87 -2.1
622,920 - GFF1759 0.87 -0.3
622,920 - GFF1759 0.87 -1.7
622,920 - GFF1759 0.87 -0.1
622,920 - GFF1759 0.87 -1.1
623,079 + -1.0
623,079 + -0.3
623,079 + -1.7
623,079 + -1.3
623,079 + -0.2
623,079 + -1.9
623,079 + -0.9
623,080 - -1.5
623,080 - -0.8
623,080 - -0.6
623,080 - -1.0
623,080 - -1.2
623,080 - -1.4
623,172 + GFF1760 0.10 -1.9
623,172 + GFF1760 0.10 -2.6
623,172 + GFF1760 0.10 -0.8
623,173 - GFF1760 0.10 -0.7
623,173 - GFF1760 0.10 +0.4
623,173 - GFF1760 0.10 -0.8
623,217 + GFF1760 0.13 -1.3
623,217 + GFF1760 0.13 +0.6
623,217 + GFF1760 0.13 -1.1
623,217 + GFF1760 0.13 -1.6
623,217 + GFF1760 0.13 -0.6
623,217 + GFF1760 0.13 -1.6
623,217 + GFF1760 0.13 -1.1
623,218 - GFF1760 0.13 -0.9
623,218 - GFF1760 0.13 -2.6
623,218 - GFF1760 0.13 -1.6
623,218 - GFF1760 0.13 -1.2
623,218 - GFF1760 0.13 -0.6
623,220 + GFF1760 0.13 -0.8
623,220 + GFF1760 0.13 -0.7
623,220 + GFF1760 0.13 -1.7
623,221 - GFF1760 0.14 -1.3
623,221 - GFF1760 0.14 -1.0
623,221 - GFF1760 0.14 -1.1
623,232 + GFF1760 0.14 -2.0
623,232 + GFF1760 0.14 -2.0
623,232 + GFF1760 0.14 -2.0
623,233 - GFF1760 0.14 -1.0
623,307 + GFF1760 0.19 -1.6
623,454 + GFF1760 0.29 +0.1
623,454 + GFF1760 0.29 -1.1
623,455 - GFF1760 0.29 -1.3
623,455 - GFF1760 0.29 -1.0
623,592 + GFF1760 0.38 -2.1
623,592 + GFF1760 0.38 -1.2
623,662 - GFF1760 0.43 -2.1
623,853 + GFF1760 0.55 -0.4
623,853 + GFF1760 0.55 -1.2
623,853 + GFF1760 0.55 -1.8
623,854 - GFF1760 0.55 -1.3
623,854 - GFF1760 0.55 -1.1
623,854 - GFF1760 0.55 -0.8

Or see this region's nucleotide sequence