Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1670 and GFF1671 overlap by 4 nucleotides GFF1671 and GFF1672 are separated by 41 nucleotides GFF1672 and GFF1673 overlap by 4 nucleotides GFF1673 and GFF1674 are separated by 105 nucleotides
GFF1670 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 524,802 to 525,245
GFF1670
GFF1671 - Cobalt-zinc-cadmium resistance protein, at 525,242 to 526,171
GFF1671
GFF1672 - Two-component sensor PilS, at 526,213 to 527,697
GFF1672
GFF1673 - Nitrogen regulation protein NR(I), at 527,694 to 528,341
GFF1673
GFF1674 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 528,447 to 528,941
GFF1674
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.927 kb on + strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.928 kb on - strand, within GFF1671 at 525.948 kb on + strand, within GFF1671 at 525.949 kb on - strand, within GFF1671 at 526.472 kb on - strand, within GFF1672 at 526.606 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.639 kb on + strand, within GFF1672 at 526.640 kb on - strand, within GFF1672 at 526.640 kb on - strand, within GFF1672 at 527.278 kb on + strand, within GFF1672 at 527.279 kb on - strand, within GFF1672 at 527.279 kb on - strand, within GFF1672 at 527.522 kb on + strand, within GFF1672 at 527.522 kb on + strand, within GFF1672 at 527.522 kb on + strand, within GFF1672 at 527.523 kb on - strand, within GFF1672 at 527.523 kb on - strand, within GFF1672 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.126 kb on + strand, within GFF1673 at 528.297 kb on + strand at 528.298 kb on - strand at 528.339 kb on + strand at 528.339 kb on + strand at 528.340 kb on - strand at 528.340 kb on - strand at 528.340 kb on - strand at 528.345 kb on + strand at 528.345 kb on + strand at 528.346 kb on - strand at 528.361 kb on + strand at 528.396 kb on + strand at 528.600 kb on + strand, within GFF1674 at 528.600 kb on + strand, within GFF1674 at 528.601 kb on - strand, within GFF1674
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 525,927 + GFF1671 0.74 -0.1 525,927 + GFF1671 0.74 +0.5 525,927 + GFF1671 0.74 -0.3 525,927 + GFF1671 0.74 -0.5 525,927 + GFF1671 0.74 +0.4 525,928 - GFF1671 0.74 -0.8 525,928 - GFF1671 0.74 +0.6 525,928 - GFF1671 0.74 +1.5 525,948 + GFF1671 0.76 +0.1 525,949 - GFF1671 0.76 -0.2 526,472 - GFF1672 0.17 +0.1 526,606 + GFF1672 0.26 -0.6 526,639 + GFF1672 0.29 -0.7 526,639 + GFF1672 0.29 +0.5 526,639 + GFF1672 0.29 -0.2 526,639 + GFF1672 0.29 +1.7 526,639 + GFF1672 0.29 -0.5 526,639 + GFF1672 0.29 -0.8 526,639 + GFF1672 0.29 -1.3 526,640 - GFF1672 0.29 +0.2 526,640 - GFF1672 0.29 +0.8 527,278 + GFF1672 0.72 +0.4 527,279 - GFF1672 0.72 -0.2 527,279 - GFF1672 0.72 -0.7 527,522 + GFF1672 0.88 -0.8 527,522 + GFF1672 0.88 -0.9 527,522 + GFF1672 0.88 -1.6 527,523 - GFF1672 0.88 -0.5 527,523 - GFF1672 0.88 -0.6 528,126 + GFF1673 0.67 -0.2 528,126 + GFF1673 0.67 +0.4 528,126 + GFF1673 0.67 -2.8 528,126 + GFF1673 0.67 -0.2 528,297 + +0.5 528,298 - -0.5 528,339 + +0.2 528,339 + -0.7 528,340 - -0.6 528,340 - -1.8 528,340 - -0.8 528,345 + -0.2 528,345 + -0.4 528,346 - +0.2 528,361 + -0.8 528,396 + +0.6 528,600 + GFF1674 0.31 +1.5 528,600 + GFF1674 0.31 -0.8 528,601 - GFF1674 0.31 +1.3
Or see this region's nucleotide sequence