Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1479 and GFF1480 are separated by 4 nucleotides GFF1480 and GFF1481 are separated by 142 nucleotides GFF1481 and GFF1482 are separated by 96 nucleotides
GFF1479 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 329,152 to 330,252
GFF1479
GFF1480 - hypothetical protein, at 330,257 to 330,970
GFF1480
GFF1481 - blr2406; hypothetical protein, at 331,113 to 331,610
GFF1481
GFF1482 - FIG00581414: hypothetical protein, at 331,707 to 332,276
GFF1482
Position (kb) 330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 330.091 kb on + strand, within GFF1479 at 330.091 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479 at 331.276 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.288 kb on + strand, within GFF1481 at 331.289 kb on - strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.369 kb on + strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.370 kb on - strand, within GFF1481 at 331.677 kb on - strand at 331.762 kb on - strand at 331.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 329,869 + GFF1479 0.65 -1.4 329,869 + GFF1479 0.65 +0.2 329,869 + GFF1479 0.65 +2.7 329,869 + GFF1479 0.65 +0.1 329,920 + GFF1479 0.70 +0.2 329,920 + GFF1479 0.70 +0.4 329,920 + GFF1479 0.70 +0.4 329,920 + GFF1479 0.70 -0.2 330,091 + GFF1479 0.85 +0.3 330,091 - GFF1479 0.85 +0.3 330,092 - GFF1479 0.85 +0.4 330,092 - GFF1479 0.85 +0.6 330,092 - GFF1479 0.85 -0.3 331,276 + GFF1481 0.33 -0.0 331,288 + GFF1481 0.35 +0.2 331,288 + GFF1481 0.35 -0.3 331,289 - GFF1481 0.35 +0.2 331,369 + GFF1481 0.51 +1.3 331,369 + GFF1481 0.51 +0.0 331,369 + GFF1481 0.51 -0.1 331,369 + GFF1481 0.51 -0.4 331,370 - GFF1481 0.52 -1.2 331,370 - GFF1481 0.52 -0.3 331,370 - GFF1481 0.52 -0.3 331,370 - GFF1481 0.52 -1.4 331,370 - GFF1481 0.52 -0.4 331,370 - GFF1481 0.52 +0.2 331,370 - GFF1481 0.52 +0.6 331,370 - GFF1481 0.52 +0.4 331,370 - GFF1481 0.52 -1.9 331,677 - -1.4 331,762 - -0.7 331,762 - -0.2
Or see this region's nucleotide sequence