Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1376 and GFF1377 are separated by 435 nucleotides GFF1377 and GFF1378 are separated by 21 nucleotides GFF1378 and GFF1379 are separated by 222 nucleotides
GFF1376 - Outer membrane porin protein 32 precursor; putative 3-hydroxyphenylpropionic acid porine, at 232,058 to 233,026
GFF1376
GFF1377 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 233,462 to 234,004
GFF1377
GFF1378 - OsmC/Ohr family protein, at 234,026 to 234,475
GFF1378
GFF1379 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 234,698 to 236,302
GFF1379
Position (kb) 234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 233.046 kb on + strand at 233.046 kb on + strand at 233.046 kb on + strand at 233.047 kb on - strand at 233.047 kb on - strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.049 kb on + strand at 233.050 kb on - strand at 233.050 kb on - strand at 233.192 kb on + strand at 233.192 kb on + strand at 233.193 kb on - strand at 233.193 kb on - strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.195 kb on + strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.196 kb on - strand at 233.199 kb on + strand at 233.199 kb on + strand at 233.199 kb on + strand at 233.199 kb on + strand at 233.199 kb on + strand at 233.200 kb on - strand at 233.200 kb on - strand at 233.200 kb on - strand at 233.200 kb on - strand at 233.200 kb on - strand at 233.200 kb on - strand at 233.207 kb on + strand at 233.207 kb on + strand at 233.207 kb on + strand at 233.207 kb on + strand at 233.208 kb on - strand at 233.208 kb on - strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.213 kb on + strand at 233.214 kb on - strand at 233.214 kb on - strand at 233.214 kb on - strand at 233.214 kb on - strand at 234.096 kb on + strand, within GFF1378 at 234.096 kb on + strand, within GFF1378 at 234.096 kb on + strand, within GFF1378 at 234.096 kb on + strand, within GFF1378 at 234.096 kb on + strand, within GFF1378 at 234.097 kb on + strand, within GFF1378 at 234.097 kb on - strand, within GFF1378 at 234.097 kb on - strand, within GFF1378 at 234.282 kb on + strand, within GFF1378 at 234.283 kb on - strand, within GFF1378 at 234.283 kb on - strand, within GFF1378 at 234.461 kb on - strand at 234.497 kb on + strand at 234.497 kb on + strand at 234.497 kb on + strand at 234.507 kb on + strand at 234.508 kb on - strand at 234.508 kb on - strand at 234.524 kb on + strand at 234.575 kb on + strand at 234.575 kb on + strand at 234.575 kb on + strand at 234.575 kb on + strand at 234.576 kb on - strand at 234.592 kb on - strand at 234.595 kb on + strand at 234.595 kb on + strand at 234.595 kb on + strand at 234.595 kb on + strand at 234.676 kb on - strand at 234.676 kb on - strand at 234.676 kb on - strand at 234.676 kb on - strand at 234.773 kb on + strand at 234.774 kb on - strand at 234.774 kb on - strand at 234.803 kb on + strand at 234.804 kb on - strand at 234.927 kb on - strand, within GFF1379 at 234.927 kb on - strand, within GFF1379 at 234.927 kb on - strand, within GFF1379 at 235.130 kb on + strand, within GFF1379 at 235.130 kb on + strand, within GFF1379 at 235.130 kb on + strand, within GFF1379 at 235.131 kb on - strand, within GFF1379 at 235.131 kb on - strand, within GFF1379 at 235.143 kb on - strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.337 kb on + strand, within GFF1379 at 235.338 kb on - strand, within GFF1379 at 235.338 kb on - strand, within GFF1379 at 235.338 kb on - strand, within GFF1379 at 235.338 kb on - strand, within GFF1379 at 235.338 kb on - strand, within GFF1379 at 235.338 kb on - strand, within GFF1379
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 233,046 + -0.1 233,046 + +0.4 233,046 + -0.7 233,047 - -0.8 233,047 - -0.9 233,049 + -1.4 233,049 + +0.3 233,049 + +0.4 233,049 + -0.8 233,049 + -0.6 233,049 + -0.3 233,049 + -0.6 233,049 + -1.7 233,050 - -0.7 233,050 - +0.3 233,192 + +0.3 233,192 + +0.1 233,193 - -0.9 233,193 - +0.4 233,195 + -0.6 233,195 + +0.4 233,195 + -0.5 233,195 + +1.0 233,195 + -0.3 233,195 + +0.5 233,195 + +0.7 233,195 + +0.3 233,195 + -0.0 233,195 + +1.5 233,196 - +0.3 233,196 - +0.5 233,196 - -0.2 233,196 - +0.7 233,196 - -1.2 233,196 - +0.3 233,196 - +0.8 233,196 - +0.3 233,196 - -0.6 233,196 - +0.3 233,199 + +1.1 233,199 + +0.2 233,199 + -0.0 233,199 + +0.4 233,199 + +2.3 233,200 - +0.2 233,200 - +0.7 233,200 - +1.0 233,200 - +1.5 233,200 - +0.3 233,200 - +0.5 233,207 + +0.3 233,207 + -0.3 233,207 + +0.4 233,207 + +0.7 233,208 - -0.3 233,208 - -0.3 233,213 + -0.1 233,213 + +0.1 233,213 + -0.2 233,213 + +0.0 233,213 + -0.3 233,213 + -0.0 233,213 + +0.8 233,213 + +0.2 233,214 - +0.4 233,214 - -1.5 233,214 - -0.5 233,214 - +0.7 234,096 + GFF1378 0.16 +0.7 234,096 + GFF1378 0.16 +1.3 234,096 + GFF1378 0.16 +0.3 234,096 + GFF1378 0.16 +0.6 234,096 + GFF1378 0.16 +0.4 234,097 + GFF1378 0.16 -1.3 234,097 - GFF1378 0.16 +1.3 234,097 - GFF1378 0.16 +0.7 234,282 + GFF1378 0.57 -0.1 234,283 - GFF1378 0.57 +1.0 234,283 - GFF1378 0.57 +0.0 234,461 - +0.2 234,497 + +0.0 234,497 + +0.2 234,497 + +0.2 234,507 + +1.1 234,508 - +1.2 234,508 - +0.6 234,524 + +0.3 234,575 + +0.7 234,575 + -0.1 234,575 + +1.2 234,575 + -0.7 234,576 - +0.3 234,592 - +1.7 234,595 + +0.4 234,595 + +0.6 234,595 + +0.7 234,595 + +0.6 234,676 - +0.7 234,676 - +0.4 234,676 - +1.2 234,676 - -0.2 234,773 + -2.1 234,774 - -2.5 234,774 - -2.8 234,803 + -4.2 234,804 - -3.5 234,927 - GFF1379 0.14 -2.5 234,927 - GFF1379 0.14 -1.6 234,927 - GFF1379 0.14 -1.3 235,130 + GFF1379 0.27 -3.6 235,130 + GFF1379 0.27 -4.6 235,130 + GFF1379 0.27 -0.8 235,131 - GFF1379 0.27 -2.5 235,131 - GFF1379 0.27 -0.5 235,143 - GFF1379 0.28 -3.6 235,337 + GFF1379 0.40 -1.2 235,337 + GFF1379 0.40 -2.2 235,337 + GFF1379 0.40 -2.4 235,337 + GFF1379 0.40 -1.7 235,337 + GFF1379 0.40 -1.0 235,337 + GFF1379 0.40 -2.8 235,338 - GFF1379 0.40 -2.3 235,338 - GFF1379 0.40 -2.6 235,338 - GFF1379 0.40 -2.9 235,338 - GFF1379 0.40 -1.9 235,338 - GFF1379 0.40 -1.5 235,338 - GFF1379 0.40 -1.8
Or see this region's nucleotide sequence