Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF126

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
139,242	+		GFF125	0.57	+0.0
139,242	+		GFF125	0.57	+0.6
139,242	+		GFF125	0.57	-0.3
139,243	-		GFF125	0.57	+0.7
139,243	-		GFF125	0.57	+0.6
139,285	+		GFF125	0.60	+0.2
139,285	+		GFF125	0.60	-0.3
139,285	+		GFF125	0.60	+0.6
139,285	+		GFF125	0.60	-0.9
139,285	+		GFF125	0.60	-0.4
139,285	+		GFF125	0.60	-0.3
139,285	+		GFF125	0.60	-0.1
139,286	-		GFF125	0.60	-0.0
139,286	-		GFF125	0.60	-1.0
139,286	-		GFF125	0.60	-0.8
139,286	-		GFF125	0.60	-1.0
139,286	-		GFF125	0.60	+1.2
139,434	+		GFF125	0.69	+0.7
139,434	+		GFF125	0.69	-0.3
139,435	-		GFF125	0.69	+0.6
139,435	-		GFF125	0.69	-1.0
139,521	+		GFF125	0.74	+0.2
139,522	-		GFF125	0.74	-0.4
139,554	+		GFF125	0.76	-0.0
139,554	+		GFF125	0.76	+0.6
139,555	-		GFF125	0.76	-1.6
139,555	-		GFF125	0.76	-0.2
139,807	-				+0.2
139,807	-				-0.7
139,807	-				-1.4
139,807	-				+0.8
139,923	+				+0.2
139,984	+				+0.1
139,984	+				-0.4
139,985	-				-0.1
139,985	-				+0.6
139,985	-				+1.2
140,003	+				+0.9
140,003	+				-0.6
140,004	-				-0.1
140,004	-				+0.4
140,027	-				+0.1
140,988	+		GFF127	0.11	+0.1
140,988	+		GFF127	0.11	+0.3
141,057	+		GFF127	0.19	-0.1
141,057	+		GFF127	0.19	+0.1
141,057	+		GFF127	0.19	+1.0
141,057	+		GFF127	0.19	+0.6
141,058	-		GFF127	0.19	+0.5
141,058	-		GFF127	0.19	+0.5
141,058	-		GFF127	0.19	-0.4
141,058	-		GFF127	0.19	+1.1
141,303	+		GFF127	0.45	+0.5
141,304	-		GFF127	0.45	-0.1
141,304	-		GFF127	0.45	+0.2
141,304	-		GFF127	0.45	+0.5
141,676	-		GFF127	0.85	+0.8