Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1259

Experiment: Ying_sugar7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 2
117,648	+				-1.7
117,763	-				-3.2
117,763	-				-1.5
117,869	-				-1.9
117,869	-				-0.4
117,869	-				-0.6
117,869	-				+0.7
117,885	+				-0.2
117,900	+		GFF1258	0.11	-0.1
117,900	+		GFF1258	0.11	-0.6
117,900	+		GFF1258	0.11	-0.7
117,900	+		GFF1258	0.11	-0.1
117,900	+		GFF1258	0.11	-1.5
117,900	+		GFF1258	0.11	-0.2
117,901	-		GFF1258	0.12	+0.6
117,901	-		GFF1258	0.12	-0.1
117,901	-		GFF1258	0.12	-0.9
117,901	-		GFF1258	0.12	-0.4
117,901	-		GFF1258	0.12	-1.9
117,901	-		GFF1258	0.12	-0.0
117,901	-		GFF1258	0.12	-0.1
117,901	-		GFF1258	0.12	+0.5
117,901	-		GFF1258	0.12	-0.3
117,901	-		GFF1258	0.12	+0.5
117,968	+		GFF1258	0.51	+0.4
117,968	+		GFF1258	0.51	+0.1
117,968	+		GFF1258	0.51	-0.1
117,969	-		GFF1258	0.51	-0.5
117,969	-		GFF1258	0.51	+0.2
117,979	+		GFF1258	0.57	-0.3
117,980	-		GFF1258	0.58	+0.2
117,984	+		GFF1258	0.60	+1.1
117,984	+		GFF1258	0.60	+0.7
117,985	-		GFF1258	0.61	-0.1
118,177	+		GFF1259	0.11	-0.2
118,177	+		GFF1259	0.11	-0.4
118,178	-		GFF1259	0.11	-0.2
118,178	-		GFF1259	0.11	+0.7
118,198	+		GFF1259	0.13	+0.5
118,199	-		GFF1259	0.13	-0.5
118,199	-		GFF1259	0.13	+0.4
118,199	-		GFF1259	0.13	-1.1
118,216	+		GFF1259	0.14	+0.0
118,216	+		GFF1259	0.14	-0.5
118,216	+		GFF1259	0.14	-0.1
118,217	-		GFF1259	0.14	+0.3
118,217	-		GFF1259	0.14	+0.5
118,228	+		GFF1259	0.15	+0.6
118,229	-		GFF1259	0.15	+0.1
118,229	-		GFF1259	0.15	+0.3
118,229	-		GFF1259	0.15	+0.3
118,397	-		GFF1259	0.28	-0.3
118,397	-		GFF1259	0.28	-0.6
118,397	-		GFF1259	0.28	+0.5
118,397	-		GFF1259	0.28	-0.8
118,397	-		GFF1259	0.28	-0.4
118,397	-		GFF1259	0.28	-0.1
118,397	-		GFF1259	0.28	+0.5
118,420	+		GFF1259	0.30	-0.0
118,420	+		GFF1259	0.30	+0.0
118,420	+		GFF1259	0.30	+1.2
118,420	+		GFF1259	0.30	+0.3
118,420	+		GFF1259	0.30	+0.4
118,421	-		GFF1259	0.30	+0.4
118,421	-		GFF1259	0.30	-0.1
118,421	-		GFF1259	0.30	+0.5
118,451	-		GFF1259	0.32	+0.3
118,451	-		GFF1259	0.32	-0.2
118,480	+		GFF1259	0.34	-0.2
118,480	+		GFF1259	0.34	-1.2
118,480	+		GFF1259	0.34	+0.2
118,481	-		GFF1259	0.34	+0.0
118,483	+		GFF1259	0.35	+0.1
118,483	+		GFF1259	0.35	+0.7
118,777	+		GFF1259	0.57	-0.2
118,777	+		GFF1259	0.57	-1.3
118,778	-		GFF1259	0.57	+0.2
118,778	-		GFF1259	0.57	+0.1
118,778	-		GFF1259	0.57	-0.4
118,855	+		GFF1259	0.63	-0.5
118,855	+		GFF1259	0.63	+0.8
118,856	-		GFF1259	0.63	+0.3
118,889	-		GFF1259	0.65	+0.6
118,889	-		GFF1259	0.65	+1.0
118,912	+		GFF1259	0.67	-0.2
118,912	+		GFF1259	0.67	-0.2
118,913	-		GFF1259	0.67	-0.3
118,913	-		GFF1259	0.67	+0.4
118,913	-		GFF1259	0.67	+0.2
118,996	+		GFF1259	0.73	+0.1
118,996	+		GFF1259	0.73	+0.8
118,997	-		GFF1259	0.73	+0.7
118,997	-		GFF1259	0.73	-1.0
119,095	+		GFF1259	0.81	-0.1
119,095	+		GFF1259	0.81	+0.9
119,123	-		GFF1259	0.83	-0.1
119,262	+				-0.7
119,344	+				-0.0
119,344	+				-0.5
119,345	-				+1.2
119,345	-				+0.8
119,345	-				+0.7
119,397	-				-0.2
119,671	+		GFF1260	0.22	+0.2
119,672	-		GFF1260	0.23	+0.1
119,789	-		GFF1260	0.36	+0.7
119,813	-		GFF1260	0.39	+0.4
119,884	+		GFF1260	0.47	-0.2
119,885	-		GFF1260	0.47	+0.0
119,885	-		GFF1260	0.47	+1.1
119,885	-		GFF1260	0.47	+1.0
119,885	-		GFF1260	0.47	-0.2
119,885	-		GFF1260	0.47	+0.1
119,885	-		GFF1260	0.47	-0.1
119,885	-		GFF1260	0.47	-0.3
119,983	+		GFF1260	0.58	-0.1
119,983	+		GFF1260	0.58	-0.3
120,143	-		GFF1260	0.76	-0.1
120,143	-		GFF1260	0.76	-0.1
120,220	+		GFF1260	0.85	-0.1
120,229	+		GFF1260	0.86	-1.0